<?xml version="1.0" encoding="UTF-8"?>
<data xmlns="http://www.aopkb.org/aop-xml">
  <chemical id="53942179-0675-4fef-90ad-d637e2a55d76">
    <casrn>7440-61-1</casrn>
    <jchem-inchi-key>JFALSRSLKYAFGM-UHFFFAOYSA-N</jchem-inchi-key>
    <indigo-inchi-key>JFALSRSLKYAFGM-UHFFFAOYSA-N</indigo-inchi-key>
    <preferred-name>Uranium</preferred-name>
    <synonyms>
      <synonym>Uranium, isotope of mass 238</synonym>
      <synonym>238U Element</synonym>
      <synonym>UN 2979 (DOT)</synonym>
      <synonym>Uranium I</synonym>
    </synonyms>
    <dsstox-id>DTXSID1042522</dsstox-id>
  </chemical>
  <chemical id="74331516-1ce4-4fe8-ac24-5d9ae77664c3">
    <casrn>7440-43-9</casrn>
    <jchem-inchi-key>BDOSMKKIYDKNTQ-UHFFFAOYSA-N</jchem-inchi-key>
    <indigo-inchi-key>BDOSMKKIYDKNTQ-UHFFFAOYSA-N</indigo-inchi-key>
    <preferred-name>Cadmium</preferred-name>
    <synonyms>
      <synonym>Cadimium</synonym>
      <synonym>CADMIUM BLUE</synonym>
      <synonym>CADMIUM, IN PLATTEN, STANGEN, BROCKEN,KOERNER</synonym>
    </synonyms>
    <dsstox-id>DTXSID1023940</dsstox-id>
  </chemical>
  <biological-object id="a2614e53-47c9-4ac1-b9be-70e94f439cfd">
    <source-id>CHEBI:35366</source-id>
    <source>CHEBI</source>
    <name>fatty acid</name>
  </biological-object>
  <biological-object id="6e897ad7-05e9-4b53-a0ab-8f3776c0d76c">
    <source-id>CHEBI:26523</source-id>
    <source>CHEBI</source>
    <name>reactive oxygen species</name>
  </biological-object>
  <biological-object id="00e40dd3-55de-4182-b6f8-2b2ee110c5a9">
    <source-id>GO:0005739</source-id>
    <source>GO</source>
    <name>mitochondrion</name>
  </biological-object>
  <biological-process id="f017bca3-7219-41de-a027-e419001b366c">
    <source-id>GO:0006635</source-id>
    <source>GO</source>
    <name>fatty acid beta-oxidation</name>
  </biological-process>
  <biological-process id="7759105f-6eff-4747-82b2-9f30a6247988">
    <source-id>GO:1903409</source-id>
    <source>GO</source>
    <name>reactive oxygen species biosynthetic process</name>
  </biological-process>
  <biological-process id="ef8354c4-83e3-468a-beb2-cfd870c9d934">
    <source-id>MP:0003674</source-id>
    <source>MP</source>
    <name>oxidative stress</name>
  </biological-process>
  <biological-process id="6581d82d-2751-43d1-b586-226f1d49a119">
    <source-id>HP:0000855</source-id>
    <source>HP</source>
    <name>Insulin resistance</name>
  </biological-process>
  <biological-action id="8a6d3c6f-8883-43ed-9199-c808ca3caeec">
    <source-id>2</source-id>
    <source>WIKI</source>
    <name>decreased</name>
  </biological-action>
  <biological-action id="7b55d1ef-9620-467f-8fdc-740b9dfa7213">
    <source-id>1</source-id>
    <source>WIKI</source>
    <name>increased</name>
  </biological-action>
  <biological-action id="d14ea9d5-f870-4112-a137-07269f6d070d">
    <source-id>7</source-id>
    <source>WIKI</source>
    <name>functional change</name>
  </biological-action>
  <stressor id="c6b43d94-d975-4107-8a12-60aa2d581f09">
    <name>Uranium</name>
    <description></description>
    <chemicals>
      <chemical-initiator chemical-id="53942179-0675-4fef-90ad-d637e2a55d76" user-term="Uranium"/>
    </chemicals>
    <exposure-characterization></exposure-characterization>
    <creation-timestamp>2021-08-05T14:28:50</creation-timestamp>
    <last-modification-timestamp>2021-08-05T14:28:50</last-modification-timestamp>
  </stressor>
  <stressor id="d9d5f11f-664a-4285-958c-5fad2603e502">
    <name>Nanoparticles and Micrometer Particles</name>
    <description></description>
    <exposure-characterization></exposure-characterization>
    <creation-timestamp>2022-02-04T13:43:43</creation-timestamp>
    <last-modification-timestamp>2022-02-04T13:43:43</last-modification-timestamp>
  </stressor>
  <stressor id="eabacd7e-b8a8-42e0-bdf8-c0ccd2228c78">
    <name>Cadmium</name>
    <description></description>
    <chemicals>
      <chemical-initiator chemical-id="74331516-1ce4-4fe8-ac24-5d9ae77664c3" user-term="Cadmium"/>
    </chemicals>
    <exposure-characterization></exposure-characterization>
    <creation-timestamp>2017-10-25T08:33:12</creation-timestamp>
    <last-modification-timestamp>2017-10-25T08:33:12</last-modification-timestamp>
  </stressor>
  <taxonomy id="ca5e618e-f99e-4fc2-b92a-eeb042893498">
    <source-id>9606</source-id>
    <source>NCBI</source>
    <name>Homo sapiens</name>
  </taxonomy>
  <taxonomy id="f368e6a4-869a-4ae7-b659-8b47d4f4c0db">
    <source-id>WikiUser_28</source-id>
    <source/>
    <name>Vertebrates</name>
  </taxonomy>
  <taxonomy id="e570c348-33ac-4711-805b-09fe8ad2339c">
    <source-id>WCS_9606</source-id>
    <source>common toxicological species</source>
    <name>human</name>
  </taxonomy>
  <taxonomy id="d8936148-80ce-4e0e-ba12-9c35d3a08dc0">
    <source-id>WikiUser_25</source-id>
    <source>Wikiuser: Cyauk</source>
    <name>human and other cells in culture</name>
  </taxonomy>
  <taxonomy id="9f33e97c-eb4e-4936-a911-578324d194dc">
    <source-id>10090</source-id>
    <source>NCBI</source>
    <name>mouse</name>
  </taxonomy>
  <taxonomy id="23ec140d-ff15-42ca-a36f-b5f81c6fef74">
    <source-id>WCS_35525</source-id>
    <source>common ecological species</source>
    <name>crustaceans</name>
  </taxonomy>
  <taxonomy id="0acff6af-036c-498a-8daf-a875a984de2b">
    <source-id>WCS_4472</source-id>
    <source>common ecological species</source>
    <name>Lemna minor</name>
  </taxonomy>
  <taxonomy id="07e78049-672c-45d6-a5db-eb30e26f0245">
    <source-id>WCS_7955</source-id>
    <source>common ecological species</source>
    <name>zebrafish</name>
  </taxonomy>
  <taxonomy id="0ec425b1-1321-4985-9534-e778c60e9f77">
    <source-id>10116</source-id>
    <source>NCBI</source>
    <name>rat</name>
  </taxonomy>
  <key-event id="1519ee76-e38c-45e2-9e2d-e73fe0133e8a">
    <title>Estrogen receptor alpha inactivation</title>
    <short-name>ERa inactivation</short-name>
    <biological-organization-level>Molecular</biological-organization-level>
    <description></description>
    <measurement-methodology></measurement-methodology>
    <evidence-supporting-taxonomic-applicability></evidence-supporting-taxonomic-applicability>
    <applicability>
    </applicability>
    <references></references>
    <source>AOPWiki</source>
    <creation-timestamp>2023-04-05T05:36:56</creation-timestamp>
    <last-modification-timestamp>2023-04-10T13:29:15</last-modification-timestamp>
  </key-event>
  <key-event id="83d77d7b-2b1d-4044-9336-26829e6b99b6">
    <title>Decreased, Mitochondrial fatty acid beta-oxidation</title>
    <short-name>Decreased, Mitochondrial fatty acid beta-oxidation</short-name>
    <biological-organization-level>Molecular</biological-organization-level>
    <description>&lt;p&gt;Fatty acid oxidation in liver tissue is controlled by PPARalpha signaling networks (Evans et al 2004).  The PPARalpha signaling network controls expression of the genes within metabolic pathways that catalyze fatty acid oxidation reactions (Desvergne and Wahli 1999).
&lt;/p&gt;</description>
    <measurement-methodology>&lt;p&gt;A variety of approaches establishing the effects of PPARalpha signaling on fatty acid oxidation are reviewed in Evans et al (2004).
&lt;/p&gt;</measurement-methodology>
    <evidence-supporting-taxonomic-applicability>&lt;p&gt;See review for Human PPARalpha signaling in (Evans et al 2004).
&lt;/p&gt;</evidence-supporting-taxonomic-applicability>
    <cell-term>
      <source-id>CL:0000182</source-id>
      <source>CL</source>
      <name>hepatocyte</name>
    </cell-term>
    <applicability>
      <taxonomy taxonomy-id="ca5e618e-f99e-4fc2-b92a-eeb042893498">
        <evidence>High</evidence>
      </taxonomy>
    </applicability>
    <biological-events>
      <biological-event object-id="a2614e53-47c9-4ac1-b9be-70e94f439cfd" process-id="f017bca3-7219-41de-a027-e419001b366c" action-id="8a6d3c6f-8883-43ed-9199-c808ca3caeec"/>
    </biological-events>
    <references>&lt;p&gt;&lt;br /&gt;
Desvergne B, Wahli W (1999) Peroxisome proliferator-activated receptors: nuclear control of metabolism. Endocrine Reviews 20(5): 649-688. 
&lt;/p&gt;&lt;p&gt;Evans RM, Barish GD, Wang YX: PPARs and the complex journey to obesity. Nat Med 2004, 10(4):355-361.
&lt;/p&gt;</references>
    <source>AOPWiki</source>
    <creation-timestamp>2016-11-29T18:41:23</creation-timestamp>
    <last-modification-timestamp>2017-09-16T10:14:56</last-modification-timestamp>
  </key-event>
  <key-event id="2ef32f23-388c-48c7-bde4-6c599377f70c">
    <title>Increased, Reactive oxygen species</title>
    <short-name>Increased, Reactive oxygen species</short-name>
    <biological-organization-level>Cellular</biological-organization-level>
    <description>&lt;p&gt;&lt;strong&gt;Biological State: &lt;/strong&gt;increased reactive oxygen species (ROS)&lt;br /&gt;
&lt;strong&gt;Biological compartment:&lt;/strong&gt; an entire cell -- may be cytosolic, may also enter organelles.&lt;/p&gt;

&lt;p&gt;Reactive oxygen species (ROS) are O2- derived molecules that can be both free radicals (e.g. superoxide, hydroxyl, peroxyl, alcoxyl) and non-radicals (hypochlorous acid, ozone and singlet oxygen) (Bedard and Krause 2007; Ozcan and Ogun 2015). ROS production occurs naturally in all kinds of tissues inside various cellular compartments, such as mitochondria and peroxisomes (Drew and Leeuwenburgh 2002; Ozcan and Ogun 2015). Furthermore, these molecules have an important function in the regulation of several biological processes &amp;ndash; they might act as antimicrobial agents or triggers of animal gamete activation and capacitation (Goud et al. 2008; Parrish 2010; Bisht et al. 2017).&amp;nbsp;&lt;br /&gt;
However, in environmental stress situations (exposure to radiation, chemicals, high temperatures) these molecules have its levels drastically increased, and overly interact with macromolecules, namely nucleic acids, proteins, carbohydrates and lipids, causing cell and tissue damage (Brieger et al. 2012; Ozcan and Ogun 2015).&amp;nbsp;&lt;/p&gt;

&lt;p&gt;Balancing ROS levels at the cellular and tissue level is an important part of many biological processes. Disbalance, mainly an increase in ROS levels, can cause cell dysfunction and irreversible cell damage.&lt;/p&gt;

&lt;p&gt;ROS are produced from both exogenous stressors and normal endogenous cellular processes, such as the mitochondrial electron transport chain (ETC). Inhibition of the ETC can result in the accumulation of ROS. Exposure to chemicals, heavy metal ions, or ionizing radiation can also result in increased production of ROS. Chemicals and heavy metal ions can deplete cellular antioxidants reducing the cell&amp;rsquo;s ability to control cellular ROS and resulting in the accumulation of ROS. Cellular antioxidants include glutathione (GSH), protein sulfhydryl groups, superoxide dismutase (SOD).&lt;/p&gt;

&lt;p&gt;ROS are radicals, ions, or molecules that have a single unpaired electron in their outermost shell of electrons, which can be categorized into two groups: free oxygen radicals and non-radical ROS [Liou et al., 2010].&lt;/p&gt;

&lt;p&gt;&amp;lt;Free oxygen radicals&amp;gt;&lt;/p&gt;

&lt;div&gt;
&lt;table cellspacing="0" class="MsoTableGrid" style="border-collapse:collapse; border:none"&gt;
	&lt;tbody&gt;
		&lt;tr&gt;
			&lt;td style="border-bottom:2px solid black; border-left:2px solid black; border-right:2px solid black; border-top:2px solid black; vertical-align:top; width:290px"&gt;
			&lt;p&gt;&lt;span style="font-size:16px"&gt;&lt;span style="font-family:Arial,Helvetica,sans-serif"&gt;uperoxide&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;
			&lt;/td&gt;
			&lt;td style="border-bottom:2px solid black; border-left:none; border-right:2px solid black; border-top:2px solid black; vertical-align:top; width:290px"&gt;
			&lt;p&gt;&lt;span style="font-size:16px"&gt;&lt;span style="font-family:Arial,Helvetica,sans-serif"&gt;O&lt;sub&gt;2&lt;/sub&gt;&amp;middot;&lt;sup&gt;-&lt;/sup&gt;&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
		&lt;tr&gt;
			&lt;td style="border-bottom:2px solid black; border-left:2px solid black; border-right:2px solid black; border-top:none; vertical-align:top; width:290px"&gt;
			&lt;p&gt;&lt;span style="font-size:16px"&gt;&lt;span style="font-family:Arial,Helvetica,sans-serif"&gt;hydroxyl radical&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;
			&lt;/td&gt;
			&lt;td style="border-bottom:2px solid black; border-left:none; border-right:2px solid black; border-top:none; vertical-align:top; width:290px"&gt;
			&lt;p&gt;&lt;span style="font-size:16px"&gt;&lt;span style="font-family:Arial,Helvetica,sans-serif"&gt;&amp;middot;OH&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
		&lt;tr&gt;
			&lt;td style="border-bottom:2px solid black; border-left:2px solid black; border-right:2px solid black; border-top:none; vertical-align:top; width:290px"&gt;
			&lt;p&gt;&lt;span style="font-size:16px"&gt;&lt;span style="font-family:Arial,Helvetica,sans-serif"&gt;nitric oxide&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;
			&lt;/td&gt;
			&lt;td style="border-bottom:2px solid black; border-left:none; border-right:2px solid black; border-top:none; vertical-align:top; width:290px"&gt;
			&lt;p&gt;&lt;span style="font-size:16px"&gt;&lt;span style="font-family:Arial,Helvetica,sans-serif"&gt;NO&amp;middot;&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
		&lt;tr&gt;
			&lt;td style="border-bottom:2px solid black; border-left:2px solid black; border-right:2px solid black; border-top:none; vertical-align:top; width:290px"&gt;
			&lt;p&gt;&lt;span style="font-size:16px"&gt;&lt;span style="font-family:Arial,Helvetica,sans-serif"&gt;organic radicals&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;
			&lt;/td&gt;
			&lt;td style="border-bottom:2px solid black; border-left:none; border-right:2px solid black; border-top:none; vertical-align:top; width:290px"&gt;
			&lt;p&gt;&lt;span style="font-size:16px"&gt;&lt;span style="font-family:Arial,Helvetica,sans-serif"&gt;R&amp;middot;&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
		&lt;tr&gt;
			&lt;td style="border-bottom:2px solid black; border-left:2px solid black; border-right:2px solid black; border-top:none; vertical-align:top; width:290px"&gt;
			&lt;p&gt;&lt;span style="font-size:16px"&gt;&lt;span style="font-family:Arial,Helvetica,sans-serif"&gt;peroxyl radicals&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;
			&lt;/td&gt;
			&lt;td style="border-bottom:2px solid black; border-left:none; border-right:2px solid black; border-top:none; vertical-align:top; width:290px"&gt;
			&lt;p&gt;&lt;span style="font-size:16px"&gt;&lt;span style="font-family:Arial,Helvetica,sans-serif"&gt;ROO&amp;middot;&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
		&lt;tr&gt;
			&lt;td style="border-bottom:2px solid black; border-left:2px solid black; border-right:2px solid black; border-top:none; vertical-align:top; width:290px"&gt;
			&lt;p&gt;&lt;span style="font-size:16px"&gt;&lt;span style="font-family:Arial,Helvetica,sans-serif"&gt;alkoxyl radicals&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;
			&lt;/td&gt;
			&lt;td style="border-bottom:2px solid black; border-left:none; border-right:2px solid black; border-top:none; vertical-align:top; width:290px"&gt;
			&lt;p&gt;&lt;span style="font-size:16px"&gt;&lt;span style="font-family:Arial,Helvetica,sans-serif"&gt;RO&amp;middot;&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
		&lt;tr&gt;
			&lt;td style="border-bottom:2px solid black; border-left:2px solid black; border-right:2px solid black; border-top:none; vertical-align:top; width:290px"&gt;
			&lt;p&gt;&lt;span style="font-size:16px"&gt;&lt;span style="font-family:Arial,Helvetica,sans-serif"&gt;thiyl radicals&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;
			&lt;/td&gt;
			&lt;td style="border-bottom:2px solid black; border-left:none; border-right:2px solid black; border-top:none; vertical-align:top; width:290px"&gt;
			&lt;p&gt;&lt;span style="font-size:16px"&gt;&lt;span style="font-family:Arial,Helvetica,sans-serif"&gt;RS&amp;middot;&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
		&lt;tr&gt;
			&lt;td style="border-bottom:2px solid black; border-left:2px solid black; border-right:2px solid black; border-top:none; vertical-align:top; width:290px"&gt;
			&lt;p&gt;&lt;span style="font-size:16px"&gt;&lt;span style="font-family:Arial,Helvetica,sans-serif"&gt;sulfonyl radicals&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;
			&lt;/td&gt;
			&lt;td style="border-bottom:2px solid black; border-left:none; border-right:2px solid black; border-top:none; vertical-align:top; width:290px"&gt;
			&lt;p&gt;&lt;span style="font-size:16px"&gt;&lt;span style="font-family:Arial,Helvetica,sans-serif"&gt;ROS&amp;middot;&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
		&lt;tr&gt;
			&lt;td style="border-bottom:2px solid black; border-left:2px solid black; border-right:2px solid black; border-top:none; vertical-align:top; width:290px"&gt;
			&lt;p&gt;&lt;span style="font-size:16px"&gt;&lt;span style="font-family:Arial,Helvetica,sans-serif"&gt;thiyl peroxyl radicals&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;
			&lt;/td&gt;
			&lt;td style="border-bottom:2px solid black; border-left:none; border-right:2px solid black; border-top:none; vertical-align:top; width:290px"&gt;
			&lt;p&gt;&lt;span style="font-size:16px"&gt;&lt;span style="font-family:Arial,Helvetica,sans-serif"&gt;RSOO&amp;middot;&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
		&lt;tr&gt;
			&lt;td style="border-bottom:2px solid black; border-left:2px solid black; border-right:2px solid black; border-top:none; vertical-align:top; width:290px"&gt;
			&lt;p&gt;&lt;span style="font-size:16px"&gt;&lt;span style="font-family:Arial,Helvetica,sans-serif"&gt;disulfides&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;
			&lt;/td&gt;
			&lt;td style="border-bottom:2px solid black; border-left:none; border-right:2px solid black; border-top:none; vertical-align:top; width:290px"&gt;
			&lt;p&gt;&lt;span style="font-size:16px"&gt;&lt;span style="font-family:Arial,Helvetica,sans-serif"&gt;RSSR&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
	&lt;/tbody&gt;
&lt;/table&gt;
&lt;/div&gt;

&lt;p&gt;&lt;span style="font-size:16px"&gt;&lt;span style="font-family:Arial,Helvetica,sans-serif"&gt;&amp;lt;Non-radical ROS&amp;gt;&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;

&lt;div&gt;
&lt;table cellspacing="0" class="MsoTableGrid" style="border-collapse:collapse; border:none"&gt;
	&lt;tbody&gt;
		&lt;tr&gt;
			&lt;td style="border-bottom:2px solid black; border-left:2px solid black; border-right:2px solid black; border-top:2px solid black; vertical-align:top; width:290px"&gt;
			&lt;p&gt;&lt;span style="font-size:16px"&gt;&lt;span style="font-family:Arial,Helvetica,sans-serif"&gt;hydrogen peroxide&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;
			&lt;/td&gt;
			&lt;td style="border-bottom:2px solid black; border-left:none; border-right:2px solid black; border-top:2px solid black; vertical-align:top; width:290px"&gt;
			&lt;p&gt;&lt;span style="font-size:16px"&gt;&lt;span style="font-family:Arial,Helvetica,sans-serif"&gt;H&lt;sub&gt;2&lt;/sub&gt;O&lt;sub&gt;2&lt;/sub&gt;&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
		&lt;tr&gt;
			&lt;td style="border-bottom:2px solid black; border-left:2px solid black; border-right:2px solid black; border-top:none; vertical-align:top; width:290px"&gt;
			&lt;p&gt;&lt;span style="font-size:16px"&gt;&lt;span style="font-family:Arial,Helvetica,sans-serif"&gt;singlet oxygen&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;
			&lt;/td&gt;
			&lt;td style="border-bottom:2px solid black; border-left:none; border-right:2px solid black; border-top:none; vertical-align:top; width:290px"&gt;
			&lt;p&gt;&lt;span style="font-size:16px"&gt;&lt;span style="font-family:Arial,Helvetica,sans-serif"&gt;&lt;sup&gt;1&lt;/sup&gt;O&lt;sub&gt;2&lt;/sub&gt;&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
		&lt;tr&gt;
			&lt;td style="border-bottom:2px solid black; border-left:2px solid black; border-right:2px solid black; border-top:none; vertical-align:top; width:290px"&gt;
			&lt;p&gt;&lt;span style="font-size:16px"&gt;&lt;span style="font-family:Arial,Helvetica,sans-serif"&gt;ozone/trioxygen&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;
			&lt;/td&gt;
			&lt;td style="border-bottom:2px solid black; border-left:none; border-right:2px solid black; border-top:none; vertical-align:top; width:290px"&gt;
			&lt;p&gt;&lt;span style="font-size:16px"&gt;&lt;span style="font-family:Arial,Helvetica,sans-serif"&gt;O&lt;sub&gt;3&lt;/sub&gt;&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
		&lt;tr&gt;
			&lt;td style="border-bottom:2px solid black; border-left:2px solid black; border-right:2px solid black; border-top:none; vertical-align:top; width:290px"&gt;
			&lt;p&gt;&lt;span style="font-size:16px"&gt;&lt;span style="font-family:Arial,Helvetica,sans-serif"&gt;organic hydroperoxides&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;
			&lt;/td&gt;
			&lt;td style="border-bottom:2px solid black; border-left:none; border-right:2px solid black; border-top:none; vertical-align:top; width:290px"&gt;
			&lt;p&gt;&lt;span style="font-size:16px"&gt;&lt;span style="font-family:Arial,Helvetica,sans-serif"&gt;ROOH&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
		&lt;tr&gt;
			&lt;td style="border-bottom:2px solid black; border-left:2px solid black; border-right:2px solid black; border-top:none; vertical-align:top; width:290px"&gt;
			&lt;p&gt;&lt;span style="font-size:16px"&gt;&lt;span style="font-family:Arial,Helvetica,sans-serif"&gt;hypochlorite&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;
			&lt;/td&gt;
			&lt;td style="border-bottom:2px solid black; border-left:none; border-right:2px solid black; border-top:none; vertical-align:top; width:290px"&gt;
			&lt;p&gt;&lt;span style="font-size:16px"&gt;&lt;span style="font-family:Arial,Helvetica,sans-serif"&gt;ClO&lt;sup&gt;-&lt;/sup&gt;&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
		&lt;tr&gt;
			&lt;td style="border-bottom:2px solid black; border-left:2px solid black; border-right:2px solid black; border-top:none; vertical-align:top; width:290px"&gt;
			&lt;p&gt;&lt;span style="font-size:16px"&gt;&lt;span style="font-family:Arial,Helvetica,sans-serif"&gt;peroxynitrite&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;
			&lt;/td&gt;
			&lt;td style="border-bottom:2px solid black; border-left:none; border-right:2px solid black; border-top:none; vertical-align:top; width:290px"&gt;
			&lt;p&gt;&lt;span style="font-size:16px"&gt;&lt;span style="font-family:Arial,Helvetica,sans-serif"&gt;ONOO&lt;sup&gt;-&lt;/sup&gt;&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
		&lt;tr&gt;
			&lt;td style="border-bottom:2px solid black; border-left:2px solid black; border-right:2px solid black; border-top:none; vertical-align:top; width:290px"&gt;
			&lt;p&gt;&lt;span style="font-size:16px"&gt;&lt;span style="font-family:Arial,Helvetica,sans-serif"&gt;nitrosoperoxycarbonate anion&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;
			&lt;/td&gt;
			&lt;td style="border-bottom:2px solid black; border-left:none; border-right:2px solid black; border-top:none; vertical-align:top; width:290px"&gt;
			&lt;p&gt;&lt;span style="font-size:16px"&gt;&lt;span style="font-family:Arial,Helvetica,sans-serif"&gt;O=NOOCO&lt;sub&gt;2&lt;/sub&gt;&lt;sup&gt;-&lt;/sup&gt;&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
		&lt;tr&gt;
			&lt;td style="border-bottom:2px solid black; border-left:2px solid black; border-right:2px solid black; border-top:none; vertical-align:top; width:290px"&gt;
			&lt;p&gt;&lt;span style="font-size:16px"&gt;&lt;span style="font-family:Arial,Helvetica,sans-serif"&gt;nitrocarbonate anion&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;
			&lt;/td&gt;
			&lt;td style="border-bottom:2px solid black; border-left:none; border-right:2px solid black; border-top:none; vertical-align:top; width:290px"&gt;
			&lt;p&gt;&lt;span style="font-size:16px"&gt;&lt;span style="font-family:Arial,Helvetica,sans-serif"&gt;O&lt;sub&gt;2&lt;/sub&gt;NOCO&lt;sub&gt;2&lt;/sub&gt;&lt;sup&gt;-&lt;/sup&gt;&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
		&lt;tr&gt;
			&lt;td style="border-bottom:2px solid black; border-left:2px solid black; border-right:2px solid black; border-top:none; vertical-align:top; width:290px"&gt;
			&lt;p&gt;&lt;span style="font-size:16px"&gt;&lt;span style="font-family:Arial,Helvetica,sans-serif"&gt;dinitrogen dioxide&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;
			&lt;/td&gt;
			&lt;td style="border-bottom:2px solid black; border-left:none; border-right:2px solid black; border-top:none; vertical-align:top; width:290px"&gt;
			&lt;p&gt;&lt;span style="font-size:16px"&gt;&lt;span style="font-family:Arial,Helvetica,sans-serif"&gt;N&lt;sub&gt;2&lt;/sub&gt;O&lt;sub&gt;2&lt;/sub&gt;&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
		&lt;tr&gt;
			&lt;td style="border-bottom:2px solid black; border-left:2px solid black; border-right:2px solid black; border-top:none; vertical-align:top; width:290px"&gt;
			&lt;p&gt;&lt;span style="font-size:16px"&gt;&lt;span style="font-family:Arial,Helvetica,sans-serif"&gt;nitronium&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;
			&lt;/td&gt;
			&lt;td style="border-bottom:2px solid black; border-left:none; border-right:2px solid black; border-top:none; vertical-align:top; width:290px"&gt;
			&lt;p&gt;&lt;span style="font-size:16px"&gt;&lt;span style="font-family:Arial,Helvetica,sans-serif"&gt;NO&lt;sub&gt;2&lt;/sub&gt;&lt;sup&gt;+&lt;/sup&gt;&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
		&lt;tr&gt;
			&lt;td colspan="2" style="border-bottom:2px solid black; border-left:2px solid black; border-right:2px solid black; border-top:none; vertical-align:top; width:580px"&gt;
			&lt;p&gt;&lt;span style="font-size:16px"&gt;&lt;span style="font-family:Arial,Helvetica,sans-serif"&gt;highly reactive lipid- or carbohydrate-derived carbonyl compounds&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
	&lt;/tbody&gt;
&lt;/table&gt;
&lt;/div&gt;

&lt;p&gt;Potential sources of ROS include NADPH oxidase, xanthine oxidase, mitochondria, nitric oxide synthase, cytochrome P450, lipoxygenase/cyclooxygenase, and monoamine oxidase [Granger&amp;nbsp;et al., 2015]. ROS are generated through NADPH oxidases consisting of p47phox and p67phox. ROS are generated through xanthine oxidase activation in sepsis [Ramos&amp;nbsp;et al., 2018]. Arsenic produces ROS [Zhang et al., 2011]. Mitochondria-targeted paraquat and metformin mediate&amp;nbsp;ROS production [Chowdhury&amp;nbsp;et al., 2020]. ROS are generated by bleomycin [Lu&amp;nbsp;et al., 2010]. Radiation induces dose-dependent ROS production [Ji&amp;nbsp;et al., 2019].&lt;/p&gt;

&lt;p&gt;ROS are generated in the course of cellular respiration, metabolism, cell signaling, and inflammation [Dickinson and Chang 2011; Egea&amp;nbsp;et al. 2017]. Hydrogen peroxide is also made by the endoplasmic reticulum in the course of protein folding. Nitric oxide (NO) is produced at the highest levels by nitric oxide synthase in endothelial cells and phagocytes. NO production is one of the main mechanisms by which phagocytes kill bacteria [Wang et al., 2017]. The other species are produced by reactions with superoxide or peroxide, or by other free radicals or enzymes.&lt;/p&gt;

&lt;p&gt;ROS activity is principally local. Most ROS have short half-lives, ranging from nano- to milliseconds, so diffusion is limited, while reactive nitrogen species (RNS) nitric oxide or peroxynitrite can survive long enough to diffuse across membranes [Calcerrada&amp;nbsp;et al. 2011]. Consequently, local concentrations of ROS are much higher than average cellular concentrations, and signaling is typically controlled by colocalization with redox buffers [Dickinson and Chang 2011; Egea&amp;nbsp;et al. 2017].&lt;/p&gt;

&lt;p&gt;Although their existence is limited temporally and spatially, ROS interact with other ROS or with other nearby molecules to produce more ROS and participate in a feedback loop to amplify the ROS signal, which can increase RNS. Both ROS and RNS also move into neighboring cells, and ROS can increase intracellular ROS signaling in neighboring cells [Egea&amp;nbsp;et al. 2017].&lt;/p&gt;
</description>
    <measurement-methodology>&lt;p&gt;Photocolorimetric assays (Sharma et al. 2017; Griendling et al. 2016) or through commercial kits purchased from specialized companies.&lt;/p&gt;

&lt;p&gt;Yuan, Yan, et al., (2013) described ROS monitoring by using H&lt;sub&gt;2&lt;/sub&gt;-DCF-DA, a redox-sensitive fluorescent dye. Briefly, the harvested cells were incubated with H&lt;sub&gt;2&lt;/sub&gt;-DCF-DA (50 &amp;micro;mol/L final concentration) for 30 min in the dark at 37&amp;deg;C. After treatment, cells were immediately washed twice, re-suspended in PBS, and analyzed on a BD-FACS Aria flow cytometry. ROS generation was based on fluorescent intensity which was recorded by excitation at 504 nm and emission at 529 nm.&lt;/p&gt;

&lt;p&gt;Lipid peroxidation (LPO) can be measured as an indicator of oxidative stress damage Yen, Cheng Chien, et al., (2013).&lt;/p&gt;

&lt;p&gt;Chattopadhyay, Sukumar, et al. (2002) assayed the generation of free radicals within the cells and their extracellular release in the medium by addition of yellow NBT salt solution (Park et al., 1968). Extracellular release of ROS converted NBT to a purple colored formazan. The cells were incubated with 100 ml of 1 mg/ml NBT solution for 1 h at 37&amp;nbsp;&amp;deg;C and the product formed was assayed at 550 nm in an Anthos 2001 plate reader. The observations of the &amp;lsquo;cell-free system&amp;rsquo; were confirmed by cytological examination of parallel set of explants stained with chromogenic reactions for NO and ROS.&lt;/p&gt;

&lt;div&gt;
&lt;p&gt;&lt;strong&gt;&amp;lt;Direct detection&amp;gt;&lt;/strong&gt;&lt;/p&gt;

&lt;p&gt;Many fluorescent compounds can be used to detect ROS, some of which are specific, and others are less specific.&lt;/p&gt;

&lt;p&gt;・ROS can be detected by fluorescent probes such as p-methoxy-phenol derivative [Ashoka et al., 2020].&lt;/p&gt;

&lt;p&gt;・Chemiluminescence analysis can detect the superoxide, where some probes have a wider range for detecting hydroxyl radical, hydrogen peroxide, and peroxynitrite [Fuloria et al., 2021].&lt;/p&gt;

&lt;p&gt;・ROS in the blood can be detected using superparamagnetic iron oxide nanoparticles (SPION)-based biosensor [Lee et al., 2020].&lt;/p&gt;

&lt;p&gt;・Hydrogen peroxide (H2O2) can be detected with a colorimetric probe, which reacts with H2O2 in a 1:1 stoichiometry to produce a bright pink colored product, followed by the detection with a standard colorimetric microplate reader with a filter in the 540-570 nm range.&lt;/p&gt;

&lt;p&gt;・The levels of ROS can be quantified using multiple-step amperometry using a stainless steel counter electrode and non-leak Ag|AgCl reference node [Flaherty et al., 2017].&lt;/p&gt;

&lt;p&gt;・Singlet oxygen can be measured by monitoring the bleaching of p-nitrosodimethylaniline at 440 nm using a spectrophotometer with imidazole as a selective acceptor of singlet oxygen [Onoue et al., 2014].&lt;/p&gt;

&lt;p&gt;&lt;strong&gt;&amp;lt;Indirect Detection&amp;gt;&lt;/strong&gt;&lt;/p&gt;

&lt;p&gt;Alternative methods involve the detection of redox-dependent changes to cellular constituents such as proteins, DNA, lipids, or glutathione [Dickinson and Chang 2011; Wang et al. 2013; Griendling et al. 2016]. However, these methods cannot generally distinguish between the oxidative species behind the changes and cannot provide good resolution for the kinetics of oxidative activity.&lt;/p&gt;
&lt;/div&gt;
</measurement-methodology>
    <evidence-supporting-taxonomic-applicability>&lt;p&gt;ROS is a normal constituent found in all organisms, &lt;em&gt;lifestages, and sexes.&lt;/em&gt;&lt;/p&gt;
</evidence-supporting-taxonomic-applicability>
    <organ-term>
      <source-id>UBERON:0000062</source-id>
      <source>UBERON</source>
      <name>organ</name>
    </organ-term>
    <cell-term>
      <source-id>CL:0000000</source-id>
      <source>CL</source>
      <name>cell</name>
    </cell-term>
    <applicability>
      <sex>
        <evidence>High</evidence>
        <sex>Unspecific</sex>
      </sex>
      <life-stage>
        <evidence>High</evidence>
        <life-stage>All life stages</life-stage>
      </life-stage>
      <taxonomy taxonomy-id="f368e6a4-869a-4ae7-b659-8b47d4f4c0db">
        <evidence>High</evidence>
      </taxonomy>
      <taxonomy taxonomy-id="e570c348-33ac-4711-805b-09fe8ad2339c">
        <evidence>Moderate</evidence>
      </taxonomy>
      <taxonomy taxonomy-id="d8936148-80ce-4e0e-ba12-9c35d3a08dc0">
        <evidence>Moderate</evidence>
      </taxonomy>
      <taxonomy taxonomy-id="9f33e97c-eb4e-4936-a911-578324d194dc">
        <evidence>Moderate</evidence>
      </taxonomy>
      <taxonomy taxonomy-id="23ec140d-ff15-42ca-a36f-b5f81c6fef74">
        <evidence>High</evidence>
      </taxonomy>
      <taxonomy taxonomy-id="0acff6af-036c-498a-8daf-a875a984de2b">
        <evidence>High</evidence>
      </taxonomy>
      <taxonomy taxonomy-id="07e78049-672c-45d6-a5db-eb30e26f0245">
        <evidence>High</evidence>
      </taxonomy>
    </applicability>
    <biological-events>
      <biological-event object-id="6e897ad7-05e9-4b53-a0ab-8f3776c0d76c" process-id="7759105f-6eff-4747-82b2-9f30a6247988" action-id="7b55d1ef-9620-467f-8fdc-740b9dfa7213"/>
    </biological-events>
    <references>&lt;p&gt;B.H. Park, S.M. Fikrig, E.M. Smithwick Infection and nitroblue tetrazolium reduction by neutrophils: a diagnostic aid Lancet, 2 (1968), pp. 532-534&lt;/p&gt;

&lt;p&gt;Bedard, Karen, and Karl-Heinz Krause. 2007. &amp;ldquo;The NOX Family of ROS-Generating NADPH Oxidases: Physiology and Pathophysiology.&amp;rdquo; Physiological Reviews 87 (1): 245&amp;ndash;313.&lt;/p&gt;

&lt;p&gt;Bisht, Shilpa, Muneeb Faiq, Madhuri Tolahunase, and Rima Dada. 2017. &amp;ldquo;Oxidative Stress and Male Infertility.&amp;rdquo; Nature Reviews. Urology 14 (8): 470&amp;ndash;85.&lt;/p&gt;

&lt;p&gt;Brieger, K., S. Schiavone, F. J. Miller Jr, and K-H Krause. 2012. &amp;ldquo;Reactive Oxygen Species: From Health to Disease.&amp;rdquo; Swiss Medical Weekly 142 (August): w13659.&lt;/p&gt;

&lt;p&gt;Chattopadhyay, Sukumar, et al. &amp;quot;Apoptosis and necrosis in developing brain cells due to arsenic toxicity and protection with antioxidants.&amp;quot; Toxicology letters 136.1 (2002): 65-76.&lt;/p&gt;

&lt;p&gt;Drew, Barry, and Christiaan Leeuwenburgh. 2002. &amp;ldquo;Aging and the Role of Reactive Nitrogen Species.&amp;rdquo; Annals of the New York Academy of Sciences 959 (April): 66&amp;ndash;81.&lt;/p&gt;

&lt;p&gt;Goud, Anuradha P., Pravin T. Goud, Michael P. Diamond, Bernard Gonik, and Husam M. Abu-Soud. 2008. &amp;ldquo;Reactive Oxygen Species and Oocyte Aging: Role of Superoxide, Hydrogen Peroxide, and Hypochlorous Acid.&amp;rdquo; Free Radical Biology &amp;amp; Medicine 44 (7): 1295&amp;ndash;1304.&lt;/p&gt;

&lt;p&gt;Griendling, Kathy K., Rhian M. Touyz, Jay L. Zweier, Sergey Dikalov, William Chilian, Yeong-Renn Chen, David G. Harrison, Aruni Bhatnagar, and American Heart Association Council on Basic Cardiovascular Sciences. 2016. &amp;ldquo;Measurement of Reactive Oxygen Species, Reactive Nitrogen Species, and Redox-Dependent Signaling in the Cardiovascular System: A Scientific Statement From the American Heart Association.&amp;rdquo; Circulation Research 119 (5): e39&amp;ndash;75.&lt;/p&gt;

&lt;p&gt;Ozcan, Ayla, and Metin Ogun. 2015. &amp;ldquo;Biochemistry of Reactive Oxygen and Nitrogen Species.&amp;rdquo; In Basic Principles and Clinical Significance of Oxidative Stress, edited by Sivakumar Joghi Thatha Gowder. Rijeka: IntechOpen.&lt;/p&gt;

&lt;p&gt;Parrish, A. R. 2010. &amp;ldquo;2.27 - Hypoxia/Ischemia Signaling.&amp;rdquo; In Comprehensive Toxicology (Second Edition), edited by Charlene A. McQueen, 529&amp;ndash;42. Oxford: Elsevier.&lt;/p&gt;

&lt;p&gt;Sharma, Gunjan, Nishant Kumar Rana, Priya Singh, Pradeep Dubey, Daya Shankar Pandey, and Biplob Koch. 2017. &amp;ldquo;p53 Dependent Apoptosis and Cell Cycle Delay Induced by Heteroleptic Complexes in Human Cervical Cancer Cells.&amp;rdquo; Biomedicine &amp;amp; Pharmacotherapy = Biomedecine &amp;amp; Pharmacotherapie 88 (April): 218&amp;ndash;31.&lt;/p&gt;

&lt;p&gt;Yen, Cheng Chien, et al. &amp;quot;Inorganic arsenic causes cell apoptosis in mouse cerebrum through an oxidative stress-regulated signaling pathway.&amp;quot; Archives of toxicology 85 (2011): 565-575.&lt;/p&gt;

&lt;p&gt;Yuan, Yan, et al. &amp;quot;Cadmium-induced apoptosis in primary rat cerebral cortical neurons culture is mediated by a calcium signaling pathway.&amp;quot; PloS one 8.5 (2013): e64330.&lt;/p&gt;
</references>
    <source>AOPWiki</source>
    <creation-timestamp>2016-11-29T18:41:29</creation-timestamp>
    <last-modification-timestamp>2025-01-29T12:41:14</last-modification-timestamp>
  </key-event>
  <key-event id="f48a6073-8304-45a0-a288-492e0070fb79">
    <title>Increased, Oxidative Stress</title>
    <short-name>Increased, Oxidative Stress</short-name>
    <biological-organization-level>Molecular</biological-organization-level>
    <description></description>
    <measurement-methodology></measurement-methodology>
    <evidence-supporting-taxonomic-applicability></evidence-supporting-taxonomic-applicability>
    <cell-term>
      <source-id>CL:0000255</source-id>
      <source>CL</source>
      <name>eukaryotic cell</name>
    </cell-term>
    <applicability>
    </applicability>
    <biological-events>
      <biological-event process-id="ef8354c4-83e3-468a-beb2-cfd870c9d934" action-id="7b55d1ef-9620-467f-8fdc-740b9dfa7213"/>
    </biological-events>
    <references></references>
    <source>AOPWiki</source>
    <creation-timestamp>2016-11-29T18:41:29</creation-timestamp>
    <last-modification-timestamp>2022-02-03T14:20:13</last-modification-timestamp>
  </key-event>
  <key-event id="086ca79e-a86c-4312-98b6-9170489a37e3">
    <title>Impaired insulin signaling</title>
    <short-name>Impaired insulin signaling</short-name>
    <biological-organization-level>Cellular</biological-organization-level>
    <description></description>
    <measurement-methodology></measurement-methodology>
    <evidence-supporting-taxonomic-applicability></evidence-supporting-taxonomic-applicability>
    <applicability>
    </applicability>
    <references></references>
    <source>AOPWiki</source>
    <creation-timestamp>2023-05-25T09:46:54</creation-timestamp>
    <last-modification-timestamp>2023-05-25T09:46:54</last-modification-timestamp>
  </key-event>
  <key-event id="66e48eac-21af-4d62-ad27-70f279084a88">
    <title>Metabolic syndrome</title>
    <short-name>Metabolic syndrome</short-name>
    <biological-organization-level>Population</biological-organization-level>
    <description></description>
    <measurement-methodology></measurement-methodology>
    <evidence-supporting-taxonomic-applicability></evidence-supporting-taxonomic-applicability>
    <applicability>
    </applicability>
    <references></references>
    <source>AOPWiki</source>
    <creation-timestamp>2023-05-25T09:51:12</creation-timestamp>
    <last-modification-timestamp>2023-05-25T09:51:12</last-modification-timestamp>
  </key-event>
  <key-event id="02f3f02b-4d8e-412e-8828-bb7411e676f2">
    <title>Mitochondrial dysfunction</title>
    <short-name>Mitochondrial dysfunction</short-name>
    <biological-organization-level>Cellular</biological-organization-level>
    <description>&lt;p&gt;Mitochondrial dysfunction is a consequence of inhibition of the respiratory chain leading to oxidative stress.&lt;/p&gt;

&lt;p&gt;Mitochondria can be found in all cells and are considered the most important cellular consumers of oxygen. Furthermore, mitochondria possess numerous redox enzymes capable of transferring single electrons to oxygen, generating the superoxide (O2-). Some mitochondrial enzymes that are involved in reactive oxygen species (ROS) generation include the electron-transport chain (ETC) complexes I, II and III; pyruvate dehydrogenase (PDH) and glycerol-3-phosphate dehydrogenase (GPDH). The transfer of electrons to oxygen, generating superoxide, happens mainly when these redox carriers are charged enough with electrons and the potential energy for transfer is elevated, like in the case of high mitochondrial membrane potential. In contrast, ROS generation is decreased if there are not enough electrons and the potential energy for the transfer is not sufficient (reviewed in Lin and Beal, 2006).&lt;/p&gt;

&lt;p&gt;Cells are also able to detoxify the generated ROS due to an extensive antioxidant defence system that includes superoxide dismutases, glutathione peroxidases, catalase, thioredoxins, and peroxiredoxins in various cell organelles (reviewed in Lin and Beal, 2006). It is worth mentioning that, as in the case of ROS generation, antioxidant defences are also closely related to the redox and energetic status of mitochondria. If mitochondria are structurally and functionally healthy, an antioxidant defence mechanism balances ROS generation, and there is not much available ROS production. However, in case of mitochondrial damage, the antioxidant defence capacity drops and ROS generation takes over. Once this happens, a vicious cycle starts and ROS can further damage mitochondria, leading to more free-radical generation and further loss of antioxidant capacity. During mitochondrial dysfunction the availability of ATP also decreases, which is considered necessary for repair mechanisms after ROS generation.&lt;/p&gt;

&lt;p&gt;A number of proteins bound to the mitochondria or endoplasmic reticulum (ER), especially in the mitochondria-associated ER membrane (MAM), are playing an important role of communicators between these two organelles (reviewed Mei et al., 2013). ER stress induces mitochondrial dysfunction through regulation of Ca2+ signaling and ROS production (reviewed Mei et al., 2013). Prolonged ER stress leads to release of Ca2+ at the MAM and increased Ca2+ uptake into the mitochondrial matrix, which induces Ca2+-dependent mitochondrial outer membrane permeabilization and apoptosis. At the same, ROS are produced by proteins in the ER oxidoreductin 1 (ERO1) family. ER stress activates ERO1 and leads to excessive production of ROS, which, in turn, inactivates SERCA and activates inositol-1,4,5- trisphosphate receptors (IP3R) via oxidation, resulting in elevated levels of cytosolic Ca2+, increased mitochondrial uptake of Ca2+, and ultimately mitochondrial dysfunction. Just as ER stress can lead to mitochondrial dysfunction, mitochondrial dysfunction also induces ER Stress (reviewed Mei et al., 2013). For example, nitric oxide disrupts the mitochondrial respiratory chain and causes changes in mitochondrial Ca2+ flux which induce ER stress. Increased Ca2+ flux triggers loss of mitochondrial membrane potential (MMP), opening of mitochondrial permeability transition pore (mPTP), release of cytochrome c and apoptosis inducing factor (AIF), decreasing ATP synthesis and rendering the cells more vulnerable to both apoptosis and necrosis (Wang and Qin, 2010).&lt;/p&gt;

&lt;p&gt;&lt;u&gt;Metal-induced Mitochondrial Dysfunction&lt;/u&gt;&lt;br /&gt;
Mitochondria are an important site of Ca2+ regulation and storage, taking up Ca2+ ions electrophoretically from the cytosol through a Ca2+ uniporter, which can then accumulate in the mitochondria (Roos et al., 2012; Orrenius et al., 2015). Similarities between calcium and metals, such as cadmium and lead, makes the entrance and accumulation of these metals into the mitochondria via calcium metals possible by mode of molecular mimicry (Mathews et al., 2013; Adiele et al., 2012). The outer mitochondrial membrane also contains the divalent metal transporter (DMT1), which allows for mitochondrial uptake of divalent metals such as Fe and Mn. When cells are under heavy metal-induced stress, DMT has been shown to be overexpressed in the mitochondrial membrane, making the mitochondria targets of metal toxicity and accumulation.&lt;/p&gt;

&lt;p&gt;Heavy metal exposure in aerobic organisms increases ROS formation through redox cycling, where metals with different valence states (Fe, Cu, Cr, etc.) directly produce ROS as they are reduced by cellular antioxidants and then react with oxygen (Shaki et al., 2012; Shaki et al., 2013; Pourahmad et al., 2006; Santos et al., 2007). The production of highly reactive hydroxyl radicals under mitochondrial oxidative stress and in the presence of transition metals occurs via the Fenton reaction or Haber-Weiss reaction (Hancock et al., 2001; Valko et al., 2005; Adam-Vizi et al., 2010). Metals and ROS are capable of damaging mitochondrial DNA as well as mechanisms of DNA repair and proliferation arrest (Valko et al., 2005). Metals and ROS have the potential to directly damage mitochondrial membranes and structure by binding to and oxidizing membrane lipids and proteins. This structural damage can collapse the MMP and lead to the opening of the MPTP (Orrenius et al., 2015; Roos et al., 2012; Pourahmad et al., 2006). Uranium and mercury, for example, have both been shown to directly inhibit the mitochondrial electron transport chain and interfere with ATP production (Shaki et al., 2012; Roos et al., 2012). Furthermore, as previously mentioned, metals have been shown to inhibit ROS-detoxifying enzymes. By binding to these enzymes, metals can inhibit their antioxidant functions, and cause an accumulation of ROS and increased synthesis of more antioxidant enzymes in order to combat the oxidative stress (Blajszczak and Bonini, 2017).&lt;/p&gt;

&lt;p&gt;&lt;strong&gt;Summing up:&lt;/strong&gt; Mitochondria play a pivotal role in cell survival and cell death because they are regulators of both energy metabolism and apoptotic/necrotic pathways (Fiskum, 2000; Wieloch, 2001; Friberg and Wieloch, 2002). The production of ATP via oxidative phosphorylation is a vital mitochondrial function (Kann and Kov&amp;aacute;cs, 2007; Nunnari and Suomalainen, 2012). The ATP is continuously required for signalling processes (e.g. Ca2+ signalling), maintenance of ionic gradients across membranes, and biosynthetic processes (e.g. protein synthesis, heme synthesis or lipid and phospholipid metabolism) (Kang and Pervaiz, 2012), and (Green, 1998; McBride et al., 2006). Inhibition of mitochondrial respiration contributes to various cellular stress responses, such as deregulation of cellular Ca2+ homeostasis (Graier et al., 2007) and ROS production (Nunnari and Suomalainen, 2012; reviewed Mei et al., 2013).). It is well established in the existing literature that mitochondrial dysfunction may result in: (a) an increased ROS production and a decreased ATP level, (b) the loss of mitochondrial protein import and protein biosynthesis, (c) the reduced activities of enzymes of the mitochondrial respiratory chain and the Krebs cycle, (d) the loss of the mitochondrial membrane potential, (e) the loss of mitochondrial motility, causing a failure to re-localize to the sites with increased energy demands (f) the destruction of the mitochondrial network, and (g) increased mitochondrial Ca2+ uptake, causing Ca2+ overload (reviewed in Lin and Beal, 2006; Graier et al., 2007), (h) the rupture of the mitochondrial inner and outer membranes, leading to (i) the release of mitochondrial pro-death factors, including cytochrome c (Cyt. c), apoptosis-inducing factor, or endonuclease G (Braun, 2012; Martin, 2011; Correia et al., 2012; Cozzolino et al., 2013), which eventually leads to apoptotic, necrotic or autophagic cell death (Wang and Qin, 2010). Due to their structural and functional complexity, mitochondria present multiple targets for various compounds.&lt;/p&gt;
</description>
    <measurement-methodology>&lt;p&gt;Mitochondrial dysfunction can be detected using isolated mitochondria, intact cells or cells in culture as well as in vivo studies. Such assessment can be performed with a large range of methods (revised by Brand and Nicholls, 2011) for which some important examples are given. All approaches to assess mitochondrial dysfunction fall into two main categories: the first assesses the consequences of a loss-of-function, i.e. impaired functioning of the respiratory chain and processes linked to it. Some assay to assess this have been described for KE1, with the limitation that they are not specific for complex I. In the context of overall mitochondrial dysfunction, the same assays provide useful information, when performed under slightly different assay conditions (e.g. without addition of complex III and IV inhibitors). The second approach assesses a &amp;lsquo;non-desirable gain-of-function&amp;rsquo;, i.e. processes that are usually only present to a very small degree in healthy cells, and that are triggered in a cell, in which mitochondria fail.&lt;/p&gt;

&lt;p&gt;I. Mitochondrial dysfunction assays assessing a loss-of function.&lt;/p&gt;

&lt;p&gt;1. Cellular oxygen consumption.&lt;/p&gt;

&lt;p&gt;See KE1 for details of oxygen consumption assays. The oxygen consumption parameter can be combined with other endpoints to derive more specific information on the efficacy of mitochondrial function. One approach measures the ADP-to-O ratio (the number of ADP molecules phosphorylated per oxygen atom reduced (Hinkle, 1995 and Hafner et al., 1990). The related P/O ratio is calculated from the amount of ADP added, divided by the amount of O&lt;sub&gt;2&lt;/sub&gt; consumed while phosphorylating the added ADP (Ciapaite et al., 2005; Diepart et al., 2010; Hynes et al., 2006; James et al., 1995; von Heimburg et al., 2005).&lt;/p&gt;

&lt;p&gt;2. Mitochondrial membrane potential (&amp;Delta;&amp;psi;m ).&lt;/p&gt;

&lt;p&gt;The mitochondrial membrane potential (&amp;Delta;&amp;psi;m) is the electric potential difference across the inner mitochondrial membrane. It requires a functioning respiratory chain in the absence of mechanisms that dissipate the proton gradient without coupling it to ATP production. The classical, and still most quantitative method uses a tetraphenylphosphonium ion (TPP+)-sensitive electrode on suspensions of isolated mitochondria. The &amp;Delta;&amp;psi;m can also be measured in live cells by fluorimetric methods. These are based on dyes which accumulate in mitochochondria because of &amp;Delta;&amp;psi;m. Frequently used are tetramethylrhodamineethylester (TMRE), tetramethylrhodaminemethyl ester (TMRM) (Petronilli et al., 1999) or 5,5&amp;prime;,6,6&amp;prime;-tetrachloro-1,1&amp;prime;,3,3&amp;prime;-tetraethylbenzimidazole carbocyanide iodide (JC-1). Mitochondria with intact membrane potential concentrate JC-1, so that it forms red fluorescent aggregates, whereas de-energized mitochondria cannot concentrate JC-1 and the dilute dye fluoresces green (Barrientos et al., 1999). Assays using TMRE or TMRM measure only at one wavelength (red fluorescence), and depending on the assay setup, de-energized mitochondria become either less fluorescent (loss of the dye) or more fluorescent (attenuated dye quenching).&lt;/p&gt;

&lt;p&gt;3. Enzymatic activity of the electron transport system (ETS).&lt;/p&gt;

&lt;p&gt;Determination of ETS activity can be dene&amp;nbsp;following Owens and King&amp;#39;s assay (1975). The technique is based on a cell-free homogenate that is incubated with NADH to saturate the mitochondrial ETS and an artificial electron acceptor [l - (4 -iodophenyl) -3 - (4 -nitrophenyl) -5-phenylte trazolium chloride (INT)] to register the electron transmission rate. The oxygen consumption rate is calculated from the molar production rate of INT-formazan which is determined spectrophotometrically (Cammen et al., 1990).&lt;/p&gt;

&lt;p&gt;4. ATP content.&lt;/p&gt;

&lt;p&gt;For the evaluation of ATP levels, various commercially-available ATP assay kits are offered &amp;nbsp;based on luciferin and luciferase activity. For isolated mitochondria various methods are available to continuously measure ATP with electrodes (Laudet 2005), with luminometric methods, or for obtaining more information on different nucleotide phosphate pools (e.g. Ciapaite et al., (2005).&lt;/p&gt;

&lt;p&gt;&lt;br /&gt;
II. Mitochondrial dysfunction assays assessing a gain-of function.&lt;/p&gt;

&lt;p&gt;&lt;br /&gt;
1. Mitochondrial permeability transition pore opening (PTP).&lt;/p&gt;

&lt;p&gt;The opening of the PTP is associated with a permeabilization of mitochondrial membranes, so that different compounds and cellular constituents can change intracellular localization. This can be measured by assessment of the translocation of cytochrome c, adenylate kinase or AIF from mitochondria to the cytosol or nucleus. The translocation can be assessed biochemically in cell fractions, by imaging approaches in fixed cells or tissues or by life-cell imaging of GFP fusion proteins (Single 1998; Modjtahedi 2006). An alternative approach is to measure the accessibility of cobalt to the mitochondrial matrix in a calcein fluorescence quenching assay in live permeabilized cells (Petronilli et al., 1999).&lt;/p&gt;

&lt;p&gt;2. mtDNA damage as a biomarker of mitochondrial dysfunction.&lt;/p&gt;

&lt;p&gt;Various quantitative polymerase chain reaction (QPCR)-based assays have been developed to detect changes of DNA structure and sequence in the mitochondrial genome. mtDNA damage can be detected in blood after low-level rotenone exposure, and the damage persists even after CI activity has returned to normal. With a more sustained rotenone exposure, mtDNA damage is also detected in skeletal muscle. These data support the idea that mtDNA damage in peripheral tissues in the rotenone model may provide a biomarker of past or ongoing mitochondrial toxin exposure (Sanders et al., 2014a and 2014b).&lt;/p&gt;

&lt;p&gt;3. Generation of ROS and resultant oxidative stress.&lt;/p&gt;

&lt;p&gt;a. General approach. Electrons from the mitochondrial ETS may be transferred &amp;lsquo;erroneously&amp;rsquo; to molecular oxygen to form superoxide anions. This type of side reaction can be strongly enhanced upon mitochondrial damage. As superoxide may form hydrogen peroxide, hydroxyl radicals or other reactive oxygen species, a large number of direct ROS assays and assays assessing the effects of ROS (indirect ROS assays) are available (Adam-Vizi, 2005; Fan and Li 2014). Direct assays are based on the chemical modification of fluorescent or luminescent reporters by ROS species. Indirect assays assess cellular metabolites, the concentration of which is changed in the presence of ROS (e.g. glutathione, malonaldehyde, isoprostanes,etc.) At the animal level the effects of oxidative stress are measured from biomarkers in the blood or urine.&lt;/p&gt;

&lt;p&gt;b. Measurement of the cellular glutathione (GSH) status. GSH is regenerated from its oxidized form (GSSH) by the action of an NADPH dependent reductase (GSSH + NADPH + H+ &amp;agrave; 2 GSH + NADP+). The ratio of GSH/GSSG is therefore a good indicator for the cellular NADH+/NADPH ratio (i.e. the redox potential). GSH and GSSH levels can be determined by HPLC, capillary electrophoresis, or biochemically with DTNB (Ellman&amp;rsquo;s reagent). As excess GSSG is rapidly exported from most cells to maintain a constant GSH/GSSG ratio, a reduction of total glutathione (GSH/GSSG) is often a good surrogate measure for oxidative stress.&lt;/p&gt;

&lt;p&gt;c. Quantification of lipid peroxidation. Measurement of lipid peroxidation has historically relied on the detection of thiobarbituric acid (TBA)-reactive compounds such as malondialdehyde generated from the decomposition of cellular membrane lipid under oxidative stress (Pryor et al., 1976). This method is quite sensitive, but not highly specific. A number of commercial assay kits are available for this assay using absorbance or fluorescence detection technologies. The formation of F2-like prostanoid derivatives of arachidonic acid, termed F2-isoprostanes (IsoP) has been shown to be more specific for lipid peroxidation. A number of commercial ELISA kits have been developed for IsoPs, but interfering agents in samples requires partial purification before analysis. Alternatively, GC/MS may be used, as robust (specific) and sensitive method.&lt;/p&gt;

&lt;p&gt;&lt;br /&gt;
d. Detection of superoxide production. Generation of superoxide by inhibition of complex I and the methods for its detection are described by Grivennikova and Vinogradov (2014). A range of different methods is also described by BioTek (&lt;a class="external free" href="http://www.biotek.com/resources/articles/reactive-oxygen-species.html" rel="nofollow" target="_blank"&gt;http://www.biotek.com/resources/articles/reactive-oxygen-species.html&lt;/a&gt;). The reduction of ferricytochrome c to ferrocytochrome c may be used to assess the rate of superoxide formation (McCord, 1968). Like in other superoxide assays, specificity can only be obtained by measurements in the&amp;nbsp;absence and presence of superoxide dismutase. Chemiluminescent reactions have been used for their increased sensitivity. The most widely used chemiluminescent substrate is lucigenin. Coelenterazine has also been used as a chemiluminescent substrate. Hydrocyanine dyes are fluorogenic sensors for superoxide and hydroxyl radical, and they become membrane impermeable after oxidation (trapping at site of formation). The best characterized of these probes are Hydro-Cy3 and Hydro-Cy5. generation of superoxide in mitochondria can be visualized using fluorescence microscopy with MitoSOX&amp;trade; Red reagent (Life Technologies). MitoSOX&amp;trade; Red reagent is a cationic derivative of dihydroethidium that permeates live cells and accumulates in mitochondria.&lt;/p&gt;

&lt;p&gt;e. Detection of hydrogen peroxide (H&lt;sub&gt;2&lt;/sub&gt;O&lt;sub&gt;2&lt;/sub&gt;) production. There are a number of fluorogenic substrates, which serve as hydrogen donors that have been used in conjunction with horseradish peroxidase (HRP) enzyme to produce intensely fluorescent products in the presence of hydrogen peroxide (Zhou et al., 1997: Ruch et al., 1983). The more commonly used substrates include diacetyldichloro-fluorescein, homovanillic acid, and Amplex&amp;reg; Red. In these examples, increasing amounts of H&lt;sub&gt;2&lt;/sub&gt;O&lt;sub&gt;2&lt;/sub&gt; form increasing amounts of fluorescent product (Tarpley et al., 2004).&lt;/p&gt;

&lt;p&gt;Summing up, mitochondrial dysfunction can be measured by: &amp;bull; ROS production: superoxide (O2-), and hydroxyl radicals (OH&amp;minus;) &amp;bull; Nitrosative radical formation such as ONOO&amp;minus; or directly by: &amp;bull; Loss of mitochondrial membrane potential (MMP) &amp;bull; Opening of mitochondrial permeability transition pores (mPTP) &amp;bull; ATP synthesis &amp;bull; Increase in mitochondrial Ca2+ &amp;bull; Cytochrome c release &amp;bull; AIF (apoptosis inducing factor) release from mitochondria &amp;bull; Mitochondrial Complexes enzyme activity &amp;bull; Measurements of mitochondrial oxygen consumption &amp;bull; Ultrastructure of mitochondria using electron microscope and mitochondrial fragmentation measured by labelling with DsRed-Mito expression (Knott et al, 2008) Mitochondrial dysfunction-induced oxidative stress can be measured by: &amp;bull; Reactive carbonyls formations (proteins oxidation) &amp;bull; Increased 8-oxo-dG immunoreactivity (DNA oxidation) &amp;bull; Lipid peroxidation (formation of malondialdehyde (MDA) and 4- hydroxynonenal (HNE) &amp;bull; 3-nitrotyrosine (3-NT) formation, marker of protein nitration &amp;bull; Translocation of Bid and Bax to mitochondria &amp;bull; Measurement of intracellular free calcium concentration ([Ca2+]i): Cells are loaded with 4 &amp;mu;M fura-2/AM). &amp;bull; Ratio between reduced and oxidized form of glutathione (GSH depletion) (Promega assay, TB369; Radkowsky et al., 1986) &amp;bull; Neuronal nitric oxide synthase (nNOS) activation that is Ca2+-dependent. All above measurements can be performed as the assays for each readout are well established in the existing literature (e.g. Bal-Price and Brown, 2000; Bal-Price et al., 2002; Fujikawa, 2015; Walker et al., 1995). See also KE &lt;a href="/wiki/index.php/Event:209" title="Event:209"&gt; Oxidative Stress, Increase&lt;/a&gt;&lt;/p&gt;

&lt;table border="1" cellpadding="1" cellspacing="1"&gt;
	&lt;tbody&gt;
		&lt;tr&gt;
			&lt;td&gt;
			&lt;p&gt;&lt;strong&gt;Assay Type &amp;amp; Measured Content&lt;/strong&gt;&lt;/p&gt;
			&lt;/td&gt;
			&lt;td&gt;&lt;strong&gt;Description&lt;/strong&gt;&lt;/td&gt;
			&lt;td&gt;&lt;strong&gt;Dose Range Studied&lt;/strong&gt;&lt;/td&gt;
			&lt;td&gt;
			&lt;p&gt;&lt;strong&gt;Assay Characteristics&lt;/strong&gt;&lt;/p&gt;

			&lt;p&gt;&lt;strong&gt;(Length/Ease of use/Accuracy)&lt;/strong&gt;&lt;/p&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
		&lt;tr&gt;
			&lt;td&gt;
			&lt;p&gt;&lt;strong&gt;Rhodamine 123 Assay&lt;/strong&gt;&lt;/p&gt;

			&lt;p&gt;Measuring Mitochondrial membrane potential (MMP) and its collapse&amp;nbsp;&lt;/p&gt;

			&lt;p&gt;(Shaki et al., 2012)&lt;/p&gt;
			&lt;/td&gt;
			&lt;td&gt;
			&lt;p&gt;Mitochondrial uptake of cationic fluorescent dye, rhodamine 123, is used for estimation of mitochondrial membrane potential. The fluorescence was monitored using Schimadzou RF-5000U fluorescence spectrophotometer at the excitation and emission wavelength of 490 nm and 535 nm, respectively.&lt;/p&gt;
			&lt;/td&gt;
			&lt;td&gt;50, 100 and 500 &amp;mu;M of uranyl acetate&lt;/td&gt;
			&lt;td&gt;
			&lt;p&gt;Short / easy&lt;/p&gt;

			&lt;p&gt;Medium accurancy&lt;/p&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
		&lt;tr&gt;
			&lt;td&gt;
			&lt;p&gt;&lt;strong&gt;TMRE fluorescence Assay&lt;/strong&gt;&lt;/p&gt;

			&lt;p&gt;Measuring Mitochondrial permeability transition pore (mPTP) opening&lt;/p&gt;

			&lt;p&gt;(Huser et al., 1998)&lt;/p&gt;
			&lt;/td&gt;
			&lt;td&gt;Laser scanning confocal microscopy in combination with the potentiometric fluorescence dye tetramethylrhodamine ethyl ester to monitor relative changes in membrane potential in single isolated cardiac mitochondria. The cationic dye distributes across the membrane in a voltage-dependent manner. Therefore, the large potential gradient across the inner mitochondrial membrane results in the accumulation of the fluorescent dye within the matrix compartment. Rapid depolarizations are caused by the opening of the transition pore.&lt;/td&gt;
			&lt;td&gt;1 &amp;micro;M cyclosporin A&lt;/td&gt;
			&lt;td&gt;
			&lt;p&gt;Short / easy&lt;/p&gt;

			&lt;p&gt;Low accurancy&lt;/p&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
		&lt;tr&gt;
			&lt;td&gt;
			&lt;p&gt;&lt;strong&gt;GSH / GSSG Determination Assay&lt;/strong&gt;&lt;/p&gt;

			&lt;p&gt;Measuring&amp;nbsp; cellular glutathione (GSH) status; ratio of GSH/GSSG&lt;/p&gt;

			&lt;p&gt;(Owen &amp;amp; Butterfield, 2010; Shaki et al., 2013)&lt;/p&gt;
			&lt;/td&gt;
			&lt;td&gt;GSH and GSSG levels are determinted biochemically with DTNB (Ellman&amp;rsquo;s reagent). The developed yellow color was read at 412 nm on a spectrophotometer.&lt;/td&gt;
			&lt;td&gt;100 &amp;micro;M uranyl acetate&lt;/td&gt;
			&lt;td&gt;
			&lt;p&gt;Short / easy&lt;/p&gt;

			&lt;p&gt;Low accurancy&lt;/p&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
		&lt;tr&gt;
			&lt;td&gt;
			&lt;p&gt;&lt;strong&gt;TBARS Assay&lt;/strong&gt;&lt;/p&gt;

			&lt;p&gt;Quantification of lipid peroxidation&lt;/p&gt;

			&lt;p&gt;(Yuan et al., 2016)&lt;/p&gt;
			&lt;/td&gt;
			&lt;td&gt;MDA content, a product of lipid peroxidation, was measured using a thiobarbituric acid reactive substances (TBARS) assay. Briefly, the kidney cells were collected in 1 ml PBS buffer solution (pH 7.4) and sonicated. MDA reacts with thiobarbituric acid forming a colored product which can be measured at an absorbance of 532 nm.&lt;/td&gt;
			&lt;td&gt;200, 400, 800 &amp;micro;M uranyl acetate&lt;/td&gt;
			&lt;td&gt;
			&lt;p&gt;Medium / medium&lt;/p&gt;

			&lt;p&gt;High accurancy&lt;/p&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
		&lt;tr&gt;
			&lt;td&gt;
			&lt;p&gt;&lt;strong&gt;Aequorin-based bioluminescence assay&lt;/strong&gt;&lt;/p&gt;

			&lt;p&gt;Increase in mitochondrial Ca&lt;sup&gt;2+&lt;/sup&gt; influx&lt;/p&gt;

			&lt;p&gt;(Pozzan &amp;amp; Rudolf, 2009)&lt;/p&gt;
			&lt;/td&gt;
			&lt;td&gt;Together with GFP, the aequorin moiety acts as Ca&lt;sup&gt;2+&lt;/sup&gt;&amp;nbsp;sensor &lt;em&gt;in vivo&lt;/em&gt;, which delivers emission energy to the GFP acceptor molecule in a BRET (Bioluminescence Resonance Energy Transfer) process; the Ca2+ can then be visualized with fluorescence microscopy.&lt;/td&gt;
			&lt;td&gt;&amp;nbsp;&lt;/td&gt;
			&lt;td&gt;
			&lt;p&gt;Short / easy&lt;/p&gt;

			&lt;p&gt;Low accurancy&lt;/p&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
		&lt;tr&gt;
			&lt;td&gt;
			&lt;p&gt;&lt;strong&gt;Western blot &amp;amp; immunostaining analyses&lt;/strong&gt;&lt;/p&gt;

			&lt;p&gt;Measuring cytochrome c release&lt;/p&gt;
			(Chen et al., 2000)&lt;/td&gt;
			&lt;td&gt;Examining the redistribution of Cyto c in cytosolic and mitochondrial cellular fractions. Cells are homogenized and centrifuged, then prepared for immunoblots. Cellular fractions were washed in PBS and lysed in 1% NP-40 buffer. Cellular proteins were separated by SDS&amp;ndash;PAGE, transferred onto nitrocellulose membranes, probed using immunoblot analyses with antibodies specific to cyto c (6581A for Western and 65971A for immunostaining; Pharmingen)&lt;/td&gt;
			&lt;td&gt;&amp;nbsp;&lt;/td&gt;
			&lt;td&gt;
			&lt;p&gt;Short / easy&lt;/p&gt;

			&lt;p&gt;Medium accurancy&lt;/p&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
		&lt;tr&gt;
			&lt;td&gt;
			&lt;p&gt;&lt;strong&gt;Quantikine Rat/Mouse Cytochrome c Immunoassay&lt;/strong&gt;&lt;/p&gt;

			&lt;p&gt;Measuring cytochrome c release&lt;/p&gt;

			&lt;p&gt;(Shaki et al., 2012)&lt;/p&gt;
			&lt;/td&gt;
			&lt;td&gt;Cytochrome C release was measured a monoclonal antibody specific for rat/mouse cytochrome c was precoated onto the microplate. Seventy-five microliter of conjugate (containing mono- clonal antibody specific for cytochrome c conjugated to horseradish peroxidase). After 2 h of incubation, the substrate solution (100 &amp;mu;l) was added to each well and incubated for 30 min. After 100 &amp;mu;l of the stop solution was added to each well; the optical density of each well was determined by the aforementioned microplate spectrophotometer set to 450 nm.&lt;/td&gt;
			&lt;td&gt;&amp;nbsp;&lt;/td&gt;
			&lt;td&gt;
			&lt;p&gt;Short / easy&lt;/p&gt;

			&lt;p&gt;Low accurancy&lt;/p&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
		&lt;tr&gt;
			&lt;td&gt;
			&lt;p&gt;&lt;strong&gt;Membrane potential and cell viability &amp;ndash; Flow Cytometry&lt;/strong&gt;&lt;/p&gt;

			&lt;p&gt;Measuring cytochrome c release&lt;/p&gt;

			&lt;p&gt;(Kruidering et al., 1997)&lt;/p&gt;
			&lt;/td&gt;
			&lt;td&gt;&amp;ldquo;Dc and viability were determined by analyzing the R123 and propidium iodide fluorescence intensity with a FACScan flow cytometer (Becton Dickinson, San Jose, CA) equipped with an argon laser, with the Lysis software program (Becton Dickinson). R123 is a cationic dye that accumulates in the negatively charged inner side of the mitochondria. When the potential drops, less R123 accumulates in the mitochondria, which results in a lower fluorescence signal. The potential was measured as follows: at the indicated times, a 500-ml sample of the cell suspension was taken and transferred to an Eppendorf minivial. To this sample, 100 ml of 6 mM R123 in buffer D was added. After incubation for 10 min at 37&amp;deg;C, the cell suspension was centrifuged for 5 min at 80 3 &lt;em&gt;g&lt;/em&gt;. The cell pellet was resuspended in 200 ml of buffer D, containing 0.2 mM R123 and 10 mM propidium iodide, to prevent loss of R123 and to stain nonviable cells, respectively. The samples were transferred to FACScan tubes and analyzed immediately. Analysis was performed at a flow rate of&lt;br /&gt;
			60 ml/min. R123 fluorescence was detected by the FL1 detector with an emission detection limit below 560 nm. Propidium iodide fluorescence was detected by the FL3 detector, with emission detection above 620 nm. Per sample 3,000 to 5,000 cells were counted (Van de Water &lt;em&gt;et al.&lt;/em&gt;, 1993)&amp;rdquo;&lt;/td&gt;
			&lt;td&gt;&amp;nbsp;&lt;/td&gt;
			&lt;td&gt;
			&lt;p&gt;Short / easy&lt;/p&gt;

			&lt;p&gt;Medium accurancy&lt;/p&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
	&lt;/tbody&gt;
&lt;/table&gt;
</measurement-methodology>
    <evidence-supporting-taxonomic-applicability>&lt;p&gt;Mitochondrial dysfunction is a universal event occurring in cells of any species (Farooqui and Farooqui, 2012). Many invertebrate species (drosophila, C, elegans) are considered as potential models to study mitochondrial function. New data on marine invertebrates, such as molluscs and crustaceans and non-Drosophila species, are emerging (Martinez-Cruz et al., 2012). Mitochondrial dysfunction can be measured in animal models used for toxicity testing (Winklhofer and Haass, 2010; Waerzeggers et al., 2010) as well as in humans (Winklhofer and Haass, 2010).&lt;/p&gt;
</evidence-supporting-taxonomic-applicability>
    <cell-term>
      <source-id>CL:0000255</source-id>
      <source>CL</source>
      <name>eukaryotic cell</name>
    </cell-term>
    <applicability>
      <sex>
        <evidence>Not Specified</evidence>
        <sex>Unspecific</sex>
      </sex>
      <life-stage>
        <evidence>Not Specified</evidence>
        <life-stage>All life stages</life-stage>
      </life-stage>
      <taxonomy taxonomy-id="e570c348-33ac-4711-805b-09fe8ad2339c">
        <evidence>High</evidence>
      </taxonomy>
      <taxonomy taxonomy-id="9f33e97c-eb4e-4936-a911-578324d194dc">
        <evidence>High</evidence>
      </taxonomy>
      <taxonomy taxonomy-id="0ec425b1-1321-4985-9534-e778c60e9f77">
        <evidence>High</evidence>
      </taxonomy>
    </applicability>
    <biological-events>
      <biological-event object-id="00e40dd3-55de-4182-b6f8-2b2ee110c5a9" action-id="d14ea9d5-f870-4112-a137-07269f6d070d"/>
    </biological-events>
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&lt;p&gt;Adam-Vizi, V., &amp;amp; Starkov, A. A. (2010). Calcium and mitochondrial reactive oxygen species generation: How to read the facts.&amp;nbsp;Journal of Alzheimer&amp;#39;s Disease : JAD,&amp;nbsp;20 Suppl 2, S413-S426. doi:10.3233/JAD-2010-100465&lt;/p&gt;

&lt;p&gt;Adiele, R. C., Stevens, D., &amp;amp; Kamunde, C. (2012). Differential inhibition of electron transport chain enzyme complexes by cadmium and calcium in isolated rainbow trout (oncorhynchus mykiss) hepatic mitochondria.&amp;nbsp;Toxicological Sciences,&amp;nbsp;127(1), 110-119. doi:10.1093/toxsci/kfs091&lt;/p&gt;

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&lt;p&gt;Bal-Price A, Matthias A, Brown GC., Stimulation of the NADPH oxidase in activated rat microglia removes nitric oxide but induces peroxynitrite production. J. Neurochem. 2002, 80: 73-80.&lt;/p&gt;

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&lt;p&gt;Braun RJ. (2012). Mitochondrion-mediated cell death: dissecting yeast apoptosis for a better understanding of neurodegeneration. Front Oncol 2:182.&lt;/p&gt;

&lt;p&gt;Cammen M. Corwin, Susannah Christensen. John P. (1990) Electron transport system (ETS) activity as a measure of benthic macrofaunal metabolism MARINE ECOLOGY PROGRESS SERIES- (65)&amp;nbsp;: 171-182.&lt;/p&gt;

&lt;p&gt;Chen, Q., Gong, B., &amp;amp; Almasan, A. (2000). Distinct stages of cytochrome c release from mitochondria: Evidence for a feedback amplification loop linking caspase activation to mitochondrial dysfunction in genotoxic stress induced apoptosis.&amp;nbsp;Cell Death and Differentiation,&amp;nbsp;7(2), 227-233. doi:10.1038/sj.cdd.4400629&lt;/p&gt;

&lt;p&gt;Ciapaite, Lolita Van Eikenhorst, Gerco Bakker, Stephan J.L. Diamant, Michaela. Heine, Robert J Wagner, Marijke J. V. Westerhoff, Hans and Klaas Krab (2005) Modular Kinetic Analysis of the Adenine Nucleotide Translocator&amp;ndash;Mediated Effects of Palmitoyl-CoA on the Oxidative Phosphorylation in Isolated Rat Liver Mitochondria Diabetes 54:4 944-951.&lt;/p&gt;

&lt;p&gt;Correia SC, Santos RX, Perry G, Zhu X, Moreira PI, Smith MA. (2012). Mitochondrial importance in Alzheimer&amp;rsquo;s, Huntington&amp;rsquo;s and Parkinson&amp;rsquo;s diseases. Adv Exp Med Biol 724:205 &amp;ndash; 221.&lt;/p&gt;

&lt;p&gt;Cozzolino M, Ferri A, Valle C, Carri MT. (2013). Mitochondria and ALS: implications from novel genes and pathways. Mol Cell Neurosci 55:44 &amp;ndash; 49.&lt;/p&gt;

&lt;p&gt;Diepart, C, Verrax, J Calderon, PU, Feron, O., Jordan, BF, Gallez, B (2010) Comparison of methods for measuring oxygen consumption in tumor cells in vitroAnalytical Biochemistry 396 (2010) 250&amp;ndash;256.&lt;/p&gt;

&lt;p&gt;Farooqui T. and . Farooqui, A. A (2012) Oxidative stress in Vertebrates and Invertebrate: molecular aspects of cell signalling. Wiley-Blackwell,Chapter 27, pp:377- 385.&lt;/p&gt;

&lt;p&gt;Fan LM, Li JM. Evaluation of methods of detecting cell reactive oxygen species production for drug screening and cell cycle studies. J Pharmacol Toxicol Methods. 2014 Jul-Aug;70(1):40-7.&lt;/p&gt;

&lt;p&gt;Fiskum G. Mitochondrial participation in ischemic and traumatic neural cell death. J Neurotrauma. 2000 Oct;17(10):843-55.&lt;/p&gt;

&lt;p&gt;Friberg H, Wieloch T. (2002). Mitochondrial permeability transition in acute neurodegeneration. Biochimie 84:241&amp;ndash;250.&lt;/p&gt;

&lt;p&gt;Fujikawa DG, The Role of Excitotoxic Programmed Necrosis in Acute Brain Injury. Computational and Structural Biotechnology Journal, 2015, 13: 212&amp;ndash;221.&lt;/p&gt;

&lt;p&gt;Graier WF, Frieden M, Malli R. (2007). Mitochondria and Ca2+ signaling: old guests, new functions. Pflugers Arch 455:375&amp;ndash;396.&lt;/p&gt;

&lt;p&gt;Green DR. (1998). Apoptotic pathways: the roads to ruin. Cell 94:695-698.&lt;/p&gt;

&lt;p&gt;Grivennikova VG, Vinogradov AD. Generation of superoxide by the mitochondrial Complex I. Biochim Biophys Acta. 2006, 1757(5-6):553-61.&lt;/p&gt;

&lt;p&gt;Hafner RP, Brown GC, Brand MD: Analysis of the control of respiration rate, phosphorylation rate, proton leak rate and protonmotive force in isolated mitochondria using the &amp;lsquo;top-down&amp;rsquo; approach of metabolic control theory. Eur J Biochem188&amp;nbsp;:313 &amp;ndash;319,1990.&lt;/p&gt;

&lt;p&gt;Hancock, J. T., Desikan, R., &amp;amp; Neill, S. J. (2001). Role of reactive oxygen species in cell signalling pathways.&amp;nbsp;Biochemical Society Transactions,&amp;nbsp;29(Pt 2), 345-350. doi:10.1042/0300-5127:0290345 [doi]&lt;/p&gt;

&lt;p&gt;Hao, Y., Huang, J., Liu, C., Li, H., Liu, J., Zeng, Y., . . . Li, R. (2016). Differential protein expression in metallothionein protection from depleted uranium-induced nephrotoxicity.&amp;nbsp;Scientific Reports,&amp;nbsp;doi:10.1038/srep38942&lt;/p&gt;

&lt;p&gt;Hao, Y., Ren, J., Liu, C., Li, H., Liu, J., Yang, Z., . . . Su, Y. (2014). Zinc protects human kidney cells from depleted uranium induced apoptosis.&amp;nbsp;Basic &amp;amp; Clinical Pharmacology &amp;amp; Toxicology,&amp;nbsp;114, 271-280. doi:10.1111/bcpt.12167&lt;/p&gt;

&lt;p&gt;Hinkle PC (1995) Measurement of ADP/O ratios. In Bioenergetics: A Practical Approach. Brown GC, Cooper CE, Eds. Oxford, U.K., IRL Press, p.5 &amp;ndash;6.&lt;/p&gt;

&lt;p&gt;Huerta-Garc&amp;iacute;a, E., Perez-Arizti, J. A., Marquez-Ramirez, S. G., Delgado-Buenrostro, N. L., Chirino, Y. I., Iglesias, G. G., &amp;amp; Lopez-Marure, R. (2014). Titanium dioxide nanoparticles induce strong oxidative stress and mitochondrial damage in glial cells.&amp;nbsp;Free Radical Biology and Medicine,&amp;nbsp;73, 84-94. doi:10.1016/j.freeradbiomed.2014.04.026&lt;/p&gt;

&lt;p&gt;H&amp;uuml;ser, J., Rechenmacher, C. E., &amp;amp; Blatter, L. A. (1998). Imaging the permeability pore transition in single mitochondria.&amp;nbsp;Biophysical Journal,&amp;nbsp;74(4), 2129-2137. doi:10.1016/S0006-3495(98)77920-2&lt;/p&gt;

&lt;p&gt;Hynes, J.. Marroquin, L.D Ogurtsov, V.I. Christiansen, K.N. Stevens, G.J. Papkovsky, D.B. Will, Y. (2006)) Investigation of drug-induced mitochondrial toxicity using fluorescence-based oxygen-sensitive probes, Toxicol. Sci. 92 186&amp;ndash;200.&lt;/p&gt;

&lt;p&gt;James, P.E. Jackson, S.K.. Grinberg, O.Y Swartz, H.M. (1995) The effects of endotoxin on oxygen consumption of various cell types in vitro: an EPR oximetry study, Free Radic. Biol. Med. 18 (1995) 641&amp;ndash;647.&lt;/p&gt;

&lt;p&gt;Kang J, Pervaiz S. (2012). Mitochondria: Redox Metabolism and Dysfunction. Biochem Res Int 2012:896751.&lt;/p&gt;

&lt;p&gt;Kann O, Kov&amp;aacute;cs R. (2007). Mitochondria and neuronal activity. Am J Physiol Cell Physiol 292:C641-576.&lt;/p&gt;

&lt;p&gt;Karlsson, H. L., Gustafsson, J., Cronholm, P., &amp;amp; M&amp;ouml;ller, L. (2009). Size-dependent toxicity of metal oxide particles&amp;mdash;A comparison between nano- and micrometer size.&amp;nbsp;Toxicology Letters,&amp;nbsp;188(2), 112-118. doi:&lt;a href="https://doi.org/10.1016/j.toxlet.2009.03.014" target="_blank"&gt;10.1016/j.toxlet.2009.03.014&lt;/a&gt;&lt;/p&gt;

&lt;p&gt;Knott Andrew B., Guy Perkins, Robert Schwarzenbacher &amp;amp; Ella Bossy-Wetzel. Mitochondrial fragmentation in neurodegeneration. Nature Reviews Neuroscience, 2008, 229: 505-518.&lt;/p&gt;

&lt;p&gt;Kruidering, M., Van De Water, B., De Heer, E., Mulder, G. J., &amp;amp; Nagelkerke, J. F. (1997). Cisplatin-induced nephrotoxicity in porcine proximal tubular cells: Mitochondrial dysfunction by inhibition of complexes I to IV of the respiratory chain.&amp;nbsp;The Journal of Pharmacology and Experimental Therapeutics,&amp;nbsp;280(2), 638-649.&lt;/p&gt;

&lt;p&gt;Llaudet E, Hatz S, Droniou M, Dale N. Microelectrode biosensor for real-time measurement of ATP in biological tissue. Anal Chem. 2005, 77(10):3267-73.&lt;/p&gt;

&lt;p&gt;Lee HC, Wei YH. (2012). Mitochondria and aging. Adv Exp Med Biol 942:311-327.&lt;/p&gt;

&lt;p&gt;Li N, Ragheb K, Lawler G, Sturgis J, Rajwa B, et al. Mitochondrial complex I inhibitor rotenone induces apoptosis through enhancing mitochondrial reactive oxygen species production. J Biol Chem.2003;278:8516&amp;ndash;8525.&lt;/p&gt;

&lt;p&gt;Lin MT, Beal MF. Mitochondrial dysfunction and oxidative stress in neurodegenerative diseases. Nature 2006. 443:787-795.&lt;/p&gt;

&lt;p&gt;Martin LJ. (2011). Mitochondrial pathobiology in ALS. J Bioenerg Biomembr 43:569 &amp;ndash; 579.&lt;/p&gt;

&lt;p&gt;Martinez-Cruz, Oliviert Sanchez-Paz, Arturo Garcia-Carre&amp;ntilde;o, Fernando Jimenez-Gutierrez, Laura Ma. de los Angeles Navarrete del Toro and Adriana Muhlia-Almazan. Invertebrates Mitochondrial Function and Energetic Challenges (www.intechopen.com), Bioenergetics, Edited by Dr Kevin Clark, &lt;a class="internal mw-magiclink-isbn" href="/wiki/index.php/Special:BookSources/9789535100904"&gt;ISBN 978-953-51-0090-4&lt;/a&gt;, Publisher InTech, 2012, 181-218.&lt;/p&gt;

&lt;p&gt;Mathews, C. K., Holde, K. E. van, Appling, D. R., &amp;amp; Anthony-Cahill, S. J. (2013). Biochemistry (4th ed.). Toronto: Pearson.&lt;/p&gt;

&lt;p&gt;McBride HM, Neuspiel M, Wasiak S. (2006). Mitochondria: more than just a powerhouse. Curr Biol 16:R551&amp;ndash;560.&lt;/p&gt;

&lt;p&gt;McCord, J.M. and I. Fidovich (1968) The Reduction of Cytochrome C by Milk Xanthine Oxidase. J. Biol. Chem. 243:5733-5760.&lt;/p&gt;

&lt;p&gt;Mei Y, Thompson MD, Cohen RA, Tong X. (2013) Endoplasmic Reticulum Stress and Related Pathological Processes. J Pharmacol Biomed Anal.. 1:100-107.&lt;/p&gt;

&lt;p&gt;Miccadei, S., &amp;amp; Floridi, A. (1993). Sites of inhibition of mitochondrial electron transport by cadmium.&amp;nbsp;Elsevier Scientific Publishers Ireland Ltd.,&amp;nbsp;89, 159-167.Xu, X. M., &amp;amp; M&amp;oslash;ller, S. G. (2010). ROS removal by DJ-1: Arabidopsis as a new model to understand Parkinson&amp;#39;s Disease.&amp;nbsp;Plant signaling &amp;amp; behavior,&amp;nbsp;5(8), 1034&amp;ndash;1036. doi:10.4161/psb.5.8.12298&lt;/p&gt;

&lt;p&gt;Modjtahedi N, Giordanetto F, Madeo F, Kroemer G. Apoptosis-inducing factor: vital and lethal. Trends Cell Biol. 2006 May;16(5):264-72.&lt;/p&gt;

&lt;p&gt;Nunnari J, Suomalainen A. (2012). Mitochondria: in sickness and in health. Cell 148:1145&amp;ndash;1159. Hajn&amp;oacute;czky G, Csord&amp;aacute;s G, Das S, Garcia-Perez C, Saotome M, Sinha Roy S, Yi M. (2006). Mitochondrial calcium signalling and cell death: approaches for assessing the role of mitochondrial Ca2+ uptake in apoptosis. Cell Calcium 40:553-560.&lt;/p&gt;

&lt;p&gt;Oliviert Martinez-Cruz, Arturo Sanchez-Paz, Fernando Garcia-Carre&amp;ntilde;o, Laura Jimenez-Gutierrez, Ma. de los Angeles Navarrete del Toro and Adriana Muhlia-Almazan. Invertebrates Mitochondrial Function and Energetic Challenges (www.intechopen.com), Bioenergetics, Edited by Dr Kevin Clark, &lt;a href="/wiki/index.php/Special:BookSources/9789535100904"&gt;ISBN 978-953-51-0090-4&lt;/a&gt;, Publisher InTech, 2012, 181-218.&lt;/p&gt;

&lt;p&gt;Orrenius, S., Gogvadze, V., &amp;amp; Zhivotovsky, B. (2015). Calcium and mitochondria in the regulation of cell death.&amp;nbsp;Biochemical and Biophysical Research Communications,&amp;nbsp;460(1), 72-81. doi:10.1016/j.bbrc.2015.01.137&lt;/p&gt;

&lt;p&gt;Owen, J. B., &amp;amp; Butterfield, D. A. (2010). Measurement of oxidized/reduced glutathione ratio.&amp;nbsp;Methods in Molecular Biology (Clifton, N.J.),&amp;nbsp;648, 269-277. doi:10.1007/978-1-60761-756-3_18 [doi]&lt;/p&gt;

&lt;p&gt;Owens R.G. and King F.D. The measurement of respiratory lectron-transport system activity in marine zooplankton. Mar. Biol. 1975, 30:27-36.&lt;/p&gt;

&lt;p&gt;Pan, Y., Leifer, A., Ruau, D., Neuss, S., Bonrnemann, J., Schmid, G., . . . Jahnen-Dechent, W. (2009). Gold nanoparticles of diameter 1.4 nm trigger necrosis by oxidative stress and mitochondrial damage. Small, 5(8), 2067-2076. doi:10.1002/smll.200900466&lt;/p&gt;

&lt;p&gt;Petronilli V, Miotto G, Canton M, Brini M, Colonna R, Bernardi P, Di Lisa F: Transient and long-lasting openings of the mitochondrial permeability transition pore can be monitored directly in intact cells by changes in mitochondrial calcein fluorescence. Biophys J 1999, 76:725-734.&lt;/p&gt;

&lt;p&gt;Pourahmad, J., Ghashang, M., Ettehadi, H. A., &amp;amp; Ghalandari, R. (2006). A search for cellular and molecular mechanisms involved in depleted uranium (DU) toxicity.&amp;nbsp;Environmental Toxicology,&amp;nbsp;21(4), 349-354. doi:10.1002/tox.20196&lt;/p&gt;

&lt;p&gt;Pozzan, T., &amp;amp; Rudolf, R. (2009). Measurements of mitochondrial calcium in vivo.&amp;nbsp;Biochimica Et Biophysica Acta (BBA) - Bioenergetics,&amp;nbsp;1787(11), 1317-1323. doi:&lt;a href="https://doi.org/10.1016/j.bbabio.2008.11.012" target="_blank"&gt;https://doi.org/10.1016/j.bbabio.2008.11.012&lt;/a&gt;&lt;/p&gt;

&lt;p&gt;Promega GSH-Glo Glutathione Assay Technical Bulletin, TB369, Promega Corporation, Madison, WI.&lt;/p&gt;

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&lt;p&gt;Sanders LH, Howlett EH2, McCoy J, Greenamyre JT. (2014b) Mitochondrial DNA damage as a peripheral biomarker for mitochondrial toxin exposure in rats. Toxicol Sci. Dec;142(2):395-402.&lt;/p&gt;

&lt;p&gt;Santos, N. A. G., Cat&amp;atilde;o, C. S., Martins, N. M., Curti, C., Bianchi, M. L. P., &amp;amp; Santos, A. C. (2007). Cisplatin-induced nephrotoxicity is associated with oxidative stress, redox state unbalance, impairment of energetic metabolism and apoptosis in rat kidney mitochondria.&amp;nbsp;Archives of Toxicology,&amp;nbsp;81(7), 495-504. doi:10.1007/s00204-006-0173-2&lt;/p&gt;

&lt;p&gt;Shaki, F., Hosseini, M. J., Ghazi-Khansari, M., &amp;amp; Pourahmad, J. (2012). Toxicity of depleted uranium on isolated rat kidney mitochondria.&amp;nbsp;Biochimica Et Biophysica Acta - General Subjects,&amp;nbsp;1820(12), 1940-1950. doi:10.1016/j.bbagen.2012.08.015&lt;/p&gt;

&lt;p&gt;Shaki, F., Hosseini, M., Ghazi-Khansari, M., &amp;amp; Pourahmad, J. (2013). Depleted uranium induces disruption of energy homeostasis and oxidative stress in isolated rat brain mitochondria.&amp;nbsp;Metallomics,&amp;nbsp;5(6), 736-744. doi:10.1039/c3mt00019b&lt;/p&gt;

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&lt;p&gt;Tahira Farooqui and Akhlaq A. Farooqui. (2012) Oxidative stress in Vertebrates and Invertebrate: molecular aspects of cell signalling. Wiley-Blackwell,Chapter 27, pp:377- 385.&lt;/p&gt;

&lt;p&gt;Tarpley, M.M., D.A. Wink, and M.B. Grisham (2004) Methods for detection of reactive Metabolites of Oxygen and Nitrogen: in vitro and in vivo considerations. Am . J. Physiol Regul Integr Comp Physiol. 286:R431-R444.&lt;/p&gt;

&lt;p&gt;Valko, M., Morris, H., &amp;amp; Cronin, M. T. (2005). Metals, toxicity and oxidative stress.&amp;nbsp;Current Medicinal Chemistry,&amp;nbsp;12(10), 1161-1208. doi:10.2174/0929867053764635 [doi]&lt;/p&gt;

&lt;p&gt;von Heimburg, D. Hemmrich, K. Zachariah S.,. Staiger, H Pallua, N.(2005) Oxygen consumption in undifferentiated versus differentiated adipogenic mesenchymal precursor cells, Respir. Physiol. Neurobiol. 146 (2005) 107&amp;ndash;116.&lt;/p&gt;

&lt;p&gt;Waerzeggers, Yannic Monfared, Parisa Viel, Thomas Winkeler, Alexandra Jacobs, Andreas H. (2010) Mouse models in neurological disorders: Applications of non-invasive imaging, Biochimica et Biophysica Acta (BBA) - Molecular Basis of Disease, Volume 1802, Issue 10, Pages 819-839.&lt;/p&gt;

&lt;p&gt;Walker JE, Skehel JM, Buchanan SK. (1995) Structural analysis of NADH: ubiquinone oxidoreductase from bovine heart mitochondria. Methods Enzymol.;260:14&amp;ndash;34.&lt;/p&gt;

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&lt;p&gt;Wang, L., Li, J., Li, J., &amp;amp; Liu, Z. (2009). Effects of lead and/or cadmium on the oxidative damage of rat kidney cortex mitochondria.&amp;nbsp;Biol.Trace Elem.Res.,&amp;nbsp;137, 69-78. doi:10.1007/s12011-009-8560-1&lt;/p&gt;

&lt;p&gt;Wang Y., and Qin ZH., Molecular and cellular mechanisms of excitotoxic neuronal death, Apoptosis, 2010, 15:1382-1402.&lt;/p&gt;

&lt;p&gt;Wieloch T. (2001). Mitochondrial Involvement in Acute Neurodegeneration 52:247&amp;ndash;254.&lt;/p&gt;

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&lt;p&gt;Zhang, H., Chang, Z., Mehmood, K., Abbas, R. Z., Nabi, F., Rehman, M. U., . . . Zhou, D. (2018). Nano copper induces apoptosis in PK-15 cells via a mitochondria-mediated pathway.&amp;nbsp;Biological Trace Element Research,&amp;nbsp;181(1), 62-70. doi:10.1007/s12011-017-1024-0&lt;/p&gt;

&lt;p&gt;Zhou, M., Z.Diwu, Panchuk-Voloshina, N. and R.P. Haughland (1997), A Stable nonfluorescent derivative of resorufin for the fluorometric determination of trace hydrogen peroxide: application in detecting the activity of phagocyte NADPH oxidase and other oxidases. Anal. Biochem 253:162-168.&lt;/p&gt;
</references>
    <source>AOPWiki</source>
    <creation-timestamp>2016-11-29T18:41:23</creation-timestamp>
    <last-modification-timestamp>2024-04-17T08:26:08</last-modification-timestamp>
  </key-event>
  <key-event id="d47eb1e1-5e5a-4e0e-98c3-89844102d9bf">
    <title>Insulin resistance, increased</title>
    <short-name>Insulin resistance, increased</short-name>
    <biological-organization-level>Individual</biological-organization-level>
    <description>&lt;p&gt;Under normal physiological conditions, an increase in plasma glucose, for instance in the post-prandial phase, leads to increased insulin secretion by the pancreas, and consequent increase in plasma&amp;nbsp;insulin concentration. The insulin increases glucose uptake into peripheral tissues, and inhibits hepatic glycogenolysis and gluconeogenesis. In times of stress, the insulin response can be inhibited by stress hormones and proinhibitory cytokines, a mechanism known as insulin resistance (IR), that serves to maintain blood glucose levels during&amp;nbsp;stress response (Tsatsoulis et al, 2013). Inappropriate stress hormone&amp;nbsp;and cytokine generation can lead to i&lt;span style="font-size:1rem"&gt;ndividuals showing inappropriate insulin resistance, manifested as lack of&amp;nbsp;insulin-stimulation of&amp;nbsp;glucose uptake into adipose and muscle, and lack of&amp;nbsp;insulin suppression of hepatic glucose release.&amp;nbsp;&lt;/span&gt;&lt;/p&gt;

&lt;p&gt;IR is associated with multiple health conditions including obesity, type 2 diabetes mellitus, metabolic syndrome, cardiovascular disease, metabolism associated fatty liver disease and polycystic ovary syndrome. It is a complex metabolic disorder, the exact causes of which are still to be fully resolved&amp;nbsp;(Li et&amp;nbsp;al, 2022). The mechanism by which IR manifests itself is primarily by abnormalities in insulin signal transduction (Pei et al, 2022).&lt;/p&gt;
</description>
    <measurement-methodology>&lt;p&gt;Clinical detection of insulin resistance generally requires measurement of plasma insulin and/or glucose under controlled circumstances, or alongside specific interventions designed to elicit a physiological insulin response. Multiple methods&amp;nbsp;of differing complexity, technical challenge, invasiveness and reliability have been devised (see Sharma et al, 2020 for a review). The hyperinsulineamic euglycaemic clamp (HEC), involving intravenous infusion of insulin to reach steady state glycemic is considered the gold standard, but is challenging, expensive and invasive. Other methods, such as the homeostatic model for insulin resistance (HOMA-IR), a single sample method,&amp;nbsp;are simpler and less invasive, but show greater interindividual variability and only moderate agreement with&amp;nbsp;the HEC. They are more suitable as epidemiological tools for population assessments (Sharma et al, 2020).&lt;/p&gt;
</measurement-methodology>
    <evidence-supporting-taxonomic-applicability>&lt;p&gt;IR, as determined by clinical measurements, as above,&amp;nbsp;can&amp;nbsp;be determined&amp;nbsp;for male and female adult and young&amp;nbsp;humans.&lt;/p&gt;
</evidence-supporting-taxonomic-applicability>
    <applicability>
      <sex>
        <evidence>High</evidence>
        <sex>Male</sex>
      </sex>
      <sex>
        <evidence>High</evidence>
        <sex>Female</sex>
      </sex>
      <life-stage>
        <evidence>High</evidence>
        <life-stage>Adult</life-stage>
      </life-stage>
      <taxonomy taxonomy-id="e570c348-33ac-4711-805b-09fe8ad2339c">
        <evidence>High</evidence>
      </taxonomy>
      <taxonomy taxonomy-id="0ec425b1-1321-4985-9534-e778c60e9f77">
        <evidence>High</evidence>
      </taxonomy>
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    </biological-events>
    <references>&lt;p&gt;Li, M. et al (2022), &amp;quot;Trends in insulin resistance: insights into mechanisms and therapeutic strategy&amp;quot;, &lt;em&gt;Signal Transduction and Targeted Therapy&lt;/em&gt;, Vol 7,&amp;nbsp;216.&lt;/p&gt;

&lt;p&gt;Pei, J. et al (2022), &amp;quot;Current studies on molecular mechanisms of insulin resistance&amp;quot;, &lt;em&gt;Journal of Diabetes Research,&lt;/em&gt; Vol 2022, Article ID 1863429.&lt;/p&gt;

&lt;p&gt;Sharma V.R. et al (2020), &amp;quot;Measuring Insulin Resistance in Humans&amp;quot;, &lt;em&gt;Hormone Research in Paediatrics&lt;/em&gt;, Vol 93, pp 577-588.&lt;/p&gt;

&lt;p&gt;Tsatsoulis, A. et al&amp;nbsp;(2013), &amp;quot;Insulin resistance: An adaptive mechanism becomes maladaptive in the current environment &amp;mdash; An evolutionary perspective&amp;quot;,&amp;nbsp;&lt;em&gt;Metabolism&lt;/em&gt;, Vol 62, pp 622-633.&lt;/p&gt;
</references>
    <source>AOPWiki</source>
    <creation-timestamp>2023-04-03T12:14:39</creation-timestamp>
    <last-modification-timestamp>2023-05-26T06:34:08</last-modification-timestamp>
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	&lt;thead&gt;
		&lt;tr&gt;
			&lt;th&gt;Modulating Factor (MF)&lt;/th&gt;
			&lt;th&gt;MF Specification&lt;/th&gt;
			&lt;th&gt;Effect(s) on the KER&lt;/th&gt;
			&lt;th&gt;Reference(s)&lt;/th&gt;
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		&lt;tr&gt;
			&lt;td&gt;&amp;nbsp;&lt;/td&gt;
			&lt;td&gt;&amp;nbsp;&lt;/td&gt;
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    <source>AOPWiki</source>
    <creation-timestamp>2016-11-29T18:41:36</creation-timestamp>
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  <aop id="63989bf1-4ade-4bec-99f0-23bce719ee02">
    <title>ERa inactivation alters mitochondrial functions and insulin signalling in skeletal muscle and leads to insulin resistance and metabolic syndrome</title>
    <short-name>ERa inactivation leads to insulin resistance in skeletal muscle and metabolic syndrome</short-name>
    <point-of-contact>Agnes Aggy</point-of-contact>
    <authors>&lt;p&gt;&lt;span style="font-size:12pt"&gt;&lt;span style="font-family:&amp;quot;Times New Roman&amp;quot;,serif"&gt;Min Ji Kim&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;

&lt;p&gt;&lt;span style="font-size:12pt"&gt;&lt;span style="font-family:&amp;quot;Times New Roman&amp;quot;,serif"&gt;Jean-Pascal De Bandt&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;

&lt;p&gt;&lt;span style="font-size:12pt"&gt;&lt;span style="font-family:&amp;quot;Times New Roman&amp;quot;,serif"&gt;Antoine Girardon&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;

&lt;p&gt;&lt;span style="font-size:12pt"&gt;&lt;span style="font-family:&amp;quot;Times New Roman&amp;quot;,serif"&gt;Etienne Blanc&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;

&lt;p&gt;&lt;span style="font-size:12pt"&gt;&lt;span style="font-family:&amp;quot;Times New Roman&amp;quot;,serif"&gt;Xavier Coumoul &lt;/span&gt;&lt;/span&gt;&lt;/p&gt;

&lt;p&gt;&lt;span style="font-size:12pt"&gt;&lt;span style="font-family:&amp;quot;Times New Roman&amp;quot;,serif"&gt;Karine Audouze&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;

&lt;p&gt;&amp;nbsp;&lt;/p&gt;
</authors>
    <coaches>
    </coaches>
    <external_links>
    </external_links>
    <status>
      <wiki-license>BY-SA</wiki-license>
    </status>
    <oecd-project/>
    <handbook-version>2.6</handbook-version>
    <abstract>&lt;p style="text-align:justify"&gt;&lt;span style="font-size:12pt"&gt;&lt;span style="font-family:&amp;quot;Times New Roman&amp;quot;,serif"&gt;Estrogens are not only important in the development and functions of the reproductive system, but also play a role in metabolic functions and insulin sensitivity. Thus, before menopause,&amp;nbsp; women display higher insulin sensitivity and lower propensity to develop metabolic dysfunction-related diseases such as insulin resistance, type 2 diabetes, cancers and cardiovascular diseases than men but, after menopause, incidence of these diseases is similar in both sex [1]. In parallel, hormone replacement therapy has positive effects on insulin resistance [2]. Similarly, men with a mutation in the aromatase gene, who don&amp;rsquo;t have circulating estrogen, develop insulin resistance that can be reversed by estrogen therapy [3]. &lt;/span&gt;&lt;/span&gt;&lt;/p&gt;

&lt;p style="text-align:justify"&gt;&amp;nbsp;&lt;/p&gt;

&lt;p style="text-align:justify"&gt;&lt;span style="font-size:12pt"&gt;&lt;span style="font-family:&amp;quot;Times New Roman&amp;quot;,serif"&gt;Skeletal muscle is known to play a central role in the development of insulin resistance (IR). Due to the important mass of skeletal muscle (30 to 40% of total body mass), any defect in glucose entry into the muscle cells, caused by muscle IR, significantly affects whole body glucose disposition. Subsequently, IR in skeletal muscle favors hyperglycemia and increase the risk of type 2 diabetes [4]. The importance of estrogens and their effects mediated through ER&lt;span style="font-family:Symbol"&gt;a&lt;/span&gt; in insulin resistance was suggested by whole body ER&lt;span style="font-family:Symbol"&gt;a&lt;/span&gt; knock-out (KO) and muscle-specific ER&lt;span style="font-family:Symbol"&gt;a&lt;/span&gt; KO mice that are obese and insulin resistant [5,6]. A negative association between muscle ER&lt;span style="font-family:Symbol"&gt;a&lt;/span&gt; expression and fat mass or insulinemia is observed in women and in genetically obese mice emphasizing the importance of muscle ER&lt;span style="font-family:Symbol"&gt;a&lt;/span&gt; signaling in insulin sensitivity [6]. Thus, the alterations resulting from reduced muscle ER&lt;span style="font-family:Symbol"&gt;a&lt;/span&gt; activity is important to consider to better understand mechanisms leading to muscle insulin resistance. &lt;/span&gt;&lt;/span&gt;&lt;/p&gt;

&lt;p style="text-align:justify"&gt;&lt;span style="font-size:12pt"&gt;&lt;span style="font-family:&amp;quot;Times New Roman&amp;quot;,serif"&gt;Decreased mitochondrial oxidative capacity, increased production of reactive oxygen species and impaired insulin signaling should be considered as they are known to be key features of insulin-resistant muscle [7] and are also present in ER&lt;span style="font-family:Symbol"&gt;a&lt;/span&gt; KO mice [5,6]. &lt;/span&gt;&lt;/span&gt;&lt;/p&gt;

&lt;p style="text-align:justify"&gt;&amp;nbsp;&lt;/p&gt;

&lt;p style="text-align:justify"&gt;&lt;span style="font-size:12pt"&gt;&lt;span style="font-family:&amp;quot;Times New Roman&amp;quot;,serif"&gt;Thus, the AOP that we propose here links the inactivation of ER&lt;span style="font-family:Symbol"&gt;a&lt;/span&gt; in skeletal muscle to one of the hallmarks of the metabolic syndrome that is insulin resistance taking account the following events &amp;ldquo;decreased mitochondrial fatty acid oxidation&amp;rdquo;, &amp;ldquo;increased reactive oxygen species&amp;rdquo;, &amp;ldquo;mitochondrial dysfunction&amp;rdquo;, &amp;ldquo;increased oxidative stress&amp;rdquo; and &amp;ldquo;impaired insulin signaling&amp;rdquo;.&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;

&lt;p style="text-align:justify"&gt;&amp;nbsp;&lt;/p&gt;

&lt;p style="text-align:justify"&gt;&amp;nbsp;&lt;/p&gt;
</abstract>
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      <evidence-supporting-chemical-initiation></evidence-supporting-chemical-initiation>
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      <examples>&lt;p&gt;There are currently no examples of IR being used in a regulatory role.&lt;/p&gt;
</examples>
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        <evidence>High</evidence>
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    </applicability>
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      <description></description>
      <applicability></applicability>
      <key-event-essentiality-summary></key-event-essentiality-summary>
      <weight-of-evidence-summary></weight-of-evidence-summary>
      <known-modulating-factors>&lt;div&gt;
&lt;table class="table table-bordered table-fullwidth"&gt;
	&lt;thead&gt;
		&lt;tr&gt;
			&lt;th&gt;Modulating Factor (MF)&lt;/th&gt;
			&lt;th&gt;Influence or Outcome&lt;/th&gt;
			&lt;th&gt;KER(s) involved&lt;/th&gt;
		&lt;/tr&gt;
	&lt;/thead&gt;
	&lt;tbody&gt;
		&lt;tr&gt;
			&lt;td&gt;&amp;nbsp;&lt;/td&gt;
			&lt;td&gt;&amp;nbsp;&lt;/td&gt;
			&lt;td&gt;&amp;nbsp;&lt;/td&gt;
		&lt;/tr&gt;
	&lt;/tbody&gt;
&lt;/table&gt;
&lt;/div&gt;
</known-modulating-factors>
      <quantitative-considerations></quantitative-considerations>
    </overall-assessment>
    <potential-applications></potential-applications>
    <references>&lt;p&gt;&lt;span style="font-size:12pt"&gt;&lt;span style="font-family:&amp;quot;Times New Roman&amp;quot;,serif"&gt;[1]&amp;nbsp;&amp;nbsp;&amp;nbsp;&amp;nbsp;&amp;nbsp;&amp;nbsp; M.C. Carr, The emergence of the metabolic syndrome with menopause, J Clin Endocrinol Metab. 88 (2003) 2404&amp;ndash;2411. https://doi.org/10.1210/jc.2003-030242.&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;

&lt;p&gt;&lt;span style="font-size:12pt"&gt;&lt;span style="font-family:&amp;quot;Times New Roman&amp;quot;,serif"&gt;[2]&amp;nbsp;&amp;nbsp;&amp;nbsp;&amp;nbsp;&amp;nbsp;&amp;nbsp; F. Mauvais-Jarvis, J.E. Manson, J.C. Stevenson, V.A. Fonseca, Menopausal Hormone Therapy and Type 2 Diabetes Prevention: Evidence, Mechanisms, and Clinical Implications, Endocr Rev. 38 (2017) 173&amp;ndash;188. https://doi.org/10.1210/er.2016-1146.&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;

&lt;p&gt;&lt;span style="font-size:12pt"&gt;&lt;span style="font-family:&amp;quot;Times New Roman&amp;quot;,serif"&gt;[3]&amp;nbsp;&amp;nbsp;&amp;nbsp;&amp;nbsp;&amp;nbsp;&amp;nbsp; V. Rochira, B. Madeo, L. Zirilli, G. Caffagni, L. Maffei, C. Carani, Oestradiol replacement treatment and glucose homeostasis in two men with congenital aromatase deficiency: evidence for a role of oestradiol and sex steroids imbalance on insulin sensitivity in men, Diabet Med. 24 (2007) 1491&amp;ndash;1495. https://doi.org/10.1111/j.1464-5491.2007.02304.x.&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;

&lt;p&gt;&lt;span style="font-size:12pt"&gt;&lt;span style="font-family:&amp;quot;Times New Roman&amp;quot;,serif"&gt;[4]&amp;nbsp;&amp;nbsp;&amp;nbsp;&amp;nbsp;&amp;nbsp;&amp;nbsp; R.A. DeFronzo, D. Tripathy, Skeletal muscle insulin resistance is the primary defect in type 2 diabetes, Diabetes Care. 32 Suppl 2 (2009) S157-163. https://doi.org/10.2337/dc09-S302.&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;

&lt;p&gt;&lt;span style="font-size:12pt"&gt;&lt;span style="font-family:&amp;quot;Times New Roman&amp;quot;,serif"&gt;[5]&amp;nbsp;&amp;nbsp;&amp;nbsp;&amp;nbsp;&amp;nbsp;&amp;nbsp; V. Ribas, M.T.A. Nguyen, D.C. Henstridge, A.-K. Nguyen, S.W. Beaven, M.J. Watt, A.L. Hevener, Impaired oxidative metabolism and inflammation are associated with insulin resistance in ERalpha-deficient mice, Am J Physiol Endocrinol Metab. 298 (2010) E304-319. https://doi.org/10.1152/ajpendo.00504.2009.&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;

&lt;p&gt;&lt;span style="font-size:12pt"&gt;&lt;span style="font-family:&amp;quot;Times New Roman&amp;quot;,serif"&gt;[6]&amp;nbsp;&amp;nbsp;&amp;nbsp;&amp;nbsp;&amp;nbsp;&amp;nbsp; V. Ribas, B.G. Drew, Z. Zhou, J. Phun, N.Y. Kalajian, T. Soleymani, P. Daraei, K. Widjaja, J. Wanagat, T.Q. de Aguiar Vallim, A.H. Fluitt, S. Bensinger, T. Le, C. Radu, J.P. Whitelegge, S.W. Beaven, P. Tontonoz, A.J. Lusis, B.W. Parks, L. Vergnes, K. Reue, H. Singh, J.C. Bopassa, L. Toro, E. Stefani, M.J. Watt, S. Schenk, T. Akerstrom, M. Kelly, B.K. Pedersen, S.C. Hewitt, K.S. Korach, A.L. Hevener, Skeletal muscle action of estrogen receptor &amp;alpha; is critical for the maintenance of mitochondrial function and metabolic homeostasis in females, Sci Transl Med. 8 (2016) 334ra54. https://doi.org/10.1126/scitranslmed.aad3815.&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;

&lt;p&gt;&lt;span style="font-size:12pt"&gt;&lt;span style="font-family:&amp;quot;Times New Roman&amp;quot;,serif"&gt;[7]&amp;nbsp;&amp;nbsp;&amp;nbsp;&amp;nbsp;&amp;nbsp;&amp;nbsp; S. Di Meo, S. Iossa, P. Venditti, Skeletal muscle insulin resistance: role of mitochondria and other ROS sources, J Endocrinol. 233 (2017) R15&amp;ndash;R42. https://doi.org/10.1530/JOE-16-0598.&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;

&lt;p&gt;&amp;nbsp;&lt;/p&gt;
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