API

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Relationship: 303

Title

A descriptive phrase which clearly defines the two KEs being considered and the sequential relationship between them (i.e., which is upstream, and which is downstream). More help

Up Regulation, TGFbeta1 expression leads to Accumulation, Collagen

Upstream event
The causing Key Event (KE) in a Key Event Relationship (KER). More help
Up Regulation, TGFbeta1 expression
Downstream event
The responding Key Event (KE) in a Key Event Relationship (KER). More help
Accumulation, Collagen

Key Event Relationship Overview

The utility of AOPs for regulatory application is defined, to a large extent, by the confidence and precision with which they facilitate extrapolation of data measured at low levels of biological organisation to predicted outcomes at higher levels of organisation and the extent to which they can link biological effect measurements to their specific causes.Within the AOP framework, the predictive relationships that facilitate extrapolation are represented by the KERs. Consequently, the overall WoE for an AOP is a reflection in part, of the level of confidence in the underlying series of KERs it encompasses. Therefore, describing the KERs in an AOP involves assembling and organising the types of information and evidence that defines the scientific basis for inferring the probable change in, or state of, a downstream KE from the known or measured state of an upstream KE. More help

AOPs Referencing Relationship

Taxonomic Applicability

Latin or common names of a species or broader taxonomic grouping (e.g., class, order, family) that help to define the biological applicability domain of the KER.In general, this will be dictated by the more restrictive of the two KEs being linked together by the KER.  More help
Term Scientific Term Evidence Link
human Homo sapiens High NCBI

Sex Applicability

An indication of the the relevant sex for this KER. More help

Life Stage Applicability

An indication of the the relevant life stage(s) for this KER.  More help

Key Event Relationship Description

Provides a concise overview of the information given below as well as addressing details that aren’t inherent in the description of the KEs themselves. More help

TGF-β1 does not only activate HSCs, but also stimulate ECM synthesis and suppresses ECM degradation. It stimulates collagen transcription in stellate cells and connective tissue growth factor (CTGF) in hepatocytes and induces the expression of TIMP-1, an inhibitor of the collagen cleaving enzymes MMP-8 and MMP-13. TGF-β1 increases the α1(I) collagen mRNA half-life, mediated by increasing stability of α1(I) collagen mRNA through MAPK but not Smad signaling. TGF-β1 further recruits inflammatory cells, portal fibroblasts and circulating myofibroblasts to injured liver and triggers apoptosis of hepatocytes. In mature (i.e. adult) hepatocytes, TGF-β1 is responsible for inhibition of cell proliferation and induction of apoptosis. Interestingly, TGF-β1 is the most established mediator and regulator of epithelial-mesenchymal-transition (EMT) hich further contributes to te production of extracellular matrix. It has been shown that TGF-β1 mediates EMT by inducing snail-1 transcription factor and tyrosine phosphorylation of Smad2/3 with subsequent recruitment of Smad4.

Evidence Collection Strategy

Include a description of the approach for identification and assembly of the evidence base for the KER. For evidence identification, include, for example, a description of the sources and dates of information consulted including expert knowledge, databases searched and associated search terms/strings.  Include also a description of study screening criteria and methodology, study quality assessment considerations, the data extraction strategy and links to any repositories/databases of relevant references.Tabular summaries and links to relevant supporting documentation are encouraged, wherever possible. More help

Evidence Supporting this KER

Addresses the scientific evidence supporting KERs in an AOP setting the stage for overall assessment of the AOP. More help
Biological Plausibility
Addresses the biological rationale for a connection between KEupstream and KEdownstream.  This field can also incorporate additional mechanistic details that help inform the relationship between KEs, this is useful when it is not practical/pragmatic to represent these details as separate KEs due to the difficulty or relative infrequency with which it is likely to be measured.   More help
Uncertainties and Inconsistencies
Addresses inconsistencies or uncertainties in the relationship including the identification of experimental details that may explain apparent deviations from the expected patterns of concordance. More help

Known modulating factors

This table captures specific information on the MF, its properties, how it affects the KER and respective references.1.) What is the modulating factor? Name the factor for which solid evidence exists that it influences this KER. Examples: age, sex, genotype, diet 2.) Details of this modulating factor. Specify which features of this MF are relevant for this KER. Examples: a specific age range or a specific biological age (defined by...); a specific gene mutation or variant, a specific nutrient (deficit or surplus); a sex-specific homone; a certain threshold value (e.g. serum levels of a chemical above...) 3.) Description of how this modulating factor affects this KER. Describe the provable modification of the KER (also quantitatively, if known). Examples: increase or decrease of the magnitude of effect (by a factor of...); change of the time-course of the effect (onset delay by...); alteration of the probability of the effect; increase or decrease of the sensitivity of the downstream effect (by a factor of...) 4.) Provision of supporting scientific evidence for an effect of this MF on this KER. Give a list of references.  More help
Response-response Relationship
Provides sources of data that define the response-response relationships between the KEs.  More help
Time-scale
Information regarding the approximate time-scale of the changes in KEdownstream relative to changes in KEupstream (i.e., do effects on KEdownstream lag those on KEupstream by seconds, minutes, hours, or days?). More help
Known Feedforward/Feedback loops influencing this KER
Define whether there are known positive or negative feedback mechanisms involved and what is understood about their time-course and homeostatic limits. More help

Domain of Applicability

A free-text section of the KER description that the developers can use to explain their rationale for the taxonomic, life stage, or sex applicability structured terms. More help

References

List of the literature that was cited for this KER description. More help

Kolios et al., World J Gastroenterol 2006 December 14; 12(46): 7413-7420

Bataller and Brenner 2005, J.Clin. Invest. 11:209-218

Guo and Friedman 2007.SeminLiver Dis 27:413-426

Brenner 2009, Transactions of the America Clinical and Climatological Association, Vol 120

Li GT, J Gastroenterol 2008; 43:419–428

Kaimori A., 2007, J. of Biological Chemistry Vol 282. Nr30

Gressner et al. 2002, Front Biosci. Apr 1;7:d793-807

Stalnikowitz 2003, Annals of Hepatology, 2(4) 159-163